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Detailed information on CNT3031825


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500595Theobroma cacaoCoffea canephora25.5516.8282.03128forward
CNT30282947Theobroma cacaoChenopodium quinoa27.7411.3887.05139forward
CNT30382112Theobroma cacaoManihot esculenta31.9430.3682.5160forward
CNT30401900Theobroma cacaoBeta vulgaris22.5511.5588.5113forward
CNT30526451Theobroma cacaoPhaseolus vulgaris31.741581.76159forward
CNT30708158Theobroma cacaoGlycine max30.3418.3486.18152forward
CNT30562752Theobroma cacaoActinidia chinensis29.7411.7880.54149forward
CNT30236263Theobroma cacaoBrassica oleracea28.9429.8483.45145forward
CNT30262014Theobroma cacaoBrassica rapa18.9620.785.2695forward
CNT30478099Theobroma cacaoArabidopsis halleri29.9421.2280150forward
CNT3023899Theobroma cacaoPopulus trichocarpa26.1520.1288.55131forward
CNT30328621Theobroma cacaoAsparagus officinalis21.3635.9182.24107forward
CNT30120689Theobroma cacaoCitrus clementina28.1412.3988.65141forward
CNT3036109Theobroma cacaoCucumis melo28.3413.6784.51142forward
CNT30496270Theobroma cacaoDigitaria exilis27.7414.0881.29139forward
CNT30725792Theobroma cacaoLupinus angustifolius26.755.2784.33134forward

Expression of CNT3031825

Peptides detected in this lncRNA

>peptide 1 (53 aa)
LACVLPGNSSEPFNSKRTKSSQHGPPPMNQLTLTEPLQTKHLAVRLKRCRLHV*

Sequence

>CNT3031825
CCTTGCCTGCGTCTTGCCAGGTAACTCCAGTGAGCCATTCAACAGTAAGCGCACCAAGAGTAGCCAACATGGCCCACCTCCCATGAATCAGCTCACACTC
ACGGAACCTCTGCAGACCAAACACCTCGCTGTACGGCTGAAACGGTGTCGCCTTCACGTCTGAAACCTCTGTTCTGGTCCAAAGAATCCAGTTCATATTG
CAAGTACTCTGCAGGCTTCCCCAAGCCAAAAGGGTCAAACCCGTAGTCACCAACCAAGCTTCCGTCTAGCCACTCGGGTGCCACAGCTCCCGGATACCAT
AAAGGGCGATCGGAGGTTGGTTTCGACACTTTCCTGGCAGCTTTCTTGCGGCCTAAGCCGAACCTGGCCACGACTCTCCCTGAGCTAGTGTAGACGTCAG
GGAGGCGGGTGCCCATGAAGGATGATGTAGCTGCGGCAGCGGCGGTGGCAGCCATGGTTTAAGGGGAAGACTAACGGTGAAGTGATGGAAAGGGAAATGG
G