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Detailed information on CNT30281605


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 8e-85

BLAST vs NONCODE:
NONPOPT001747, E-value = 3e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30262014Chenopodium quinoaBrassica rapa14.0920.0488.0492forward
CNT3023899Chenopodium quinoaPopulus trichocarpa53.1453.381.56347forward
CNT30120689Chenopodium quinoaCitrus clementina21.1312.1384.06138forward
CNT30725365Chenopodium quinoaLupinus angustifolius20.068.0984.73131forward

Expression of CNT30281605

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGRTHNHLLSSHLNILGPWHQGTIMGGLMLSLIWAGPSWLLFWFQTRIGT*

>peptide 2 (69 aa)
LASILPGDTSKPLNSQSTKSSQHSPSAMNQLTLPEPLKPKNLTVWLQSCGLNILRLGPGPNNVTSQILG*

Sequence

>CNT30281605
CTTGCCAGCATCTTGCCAGGTGACACCAGTAAGCCACTCAACAGTCAGAGCACCAAGAGTAGCCAACATAGCCCATCTGCCATGAATCAGCTCACACTCC
CTGAACCTCTGAAGCCCAAAAACCTCACTGTATGGCTGCAAAGCTGTGGACTTAACATCCTCCGACTCGGTCCGGGTCCCAATAATGTCACCAGCCAAAT
TCTTGGCTAAGTTCTGGTCCAAACCATCATAGTCATATTGTAAATACTCAGCAGGCTTTCCTAGCCCAAATGGGTCGAACCCATAATCACCTACTAAGCT
CCCATCTAAATATTCTGGGGCCTTGGCACCAGGGTACCATAATGGGCGGTCTGATGTTGAGCCTGATTTGGGCTGGGCCTTCTTGGCTACTTTTTTGGTT
CCAAACCCGAATCGGCACGTGACCTTTCCTGAGTTGGATGGCACGTCAGGAAGACGAGTCCCGATGAAAGATGAGGTGGCAGCAGCCGAGGCCGAGGCCG
AAGCCATGTTTGATTTTATTTAGTTGTTAGATGGATTGGTGGTGGTTATGGGAGGTGTGTTGAGAGTTTAGGACTAGAAGCAAATTAAATGGTTTAGTGG
TTTGAAATGTTTTTGGTGGGGGTGTTTTATTTCTGATGTTTGGGTGATGGGCT