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Detailed information on CNT30236263


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 4e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694831Brassica oleraceaOryza sativa20.997.5185.29102forward
CNT30672010Brassica oleraceaSetaria viridis26.5421.982.95129forward
CNT30520322Brassica oleraceaSetaria italica32.313.9883.44157forward
CNT30374725Brassica oleraceaArabidopsis thaliana42.1847.0288.29205forward
CNT30282947Brassica oleraceaChenopodium quinoa29.0111.5583.69141forward
CNT30526451Brassica oleraceaPhaseolus vulgaris29.0113.384.4141forward
CNT30708158Brassica oleraceaGlycine max32.118.8283.97156forward
CNT30221568Brassica oleraceaHordeum vulgare32.31581.53157forward
CNT30387274Brassica oleraceaTriticum turgidum24.0726.1283.76117forward
CNT30562752Brassica oleraceaActinidia chinensis5019.2179.01243forward
CNT30554380Brassica oleraceaOryza glaberrima32.114.1282.69156forward
CNT30262014Brassica oleraceaBrassica rapa94.0399.5696.06457forward
CNT30454075Brassica oleraceaSaccharum spontaneum32.317.283.44157forward
CNT30132672Brassica oleraceaLolium perenne25.7222.480.8125forward
CNT30340460Brassica oleraceaEragrostis tef51.8529.6579.76252forward
CNT30478099Brassica oleraceaArabidopsis halleri43.2129.788.57210forward
CNT30596509Brassica oleraceaOryza meridionalis32.110.2682.69156forward
CNT30370789Brassica oleraceaOryza glumipatula32.111.3482.69156forward
CNT3031825Brassica oleraceaTheobroma cacao29.8428.9483.45145forward
CNT3023899Brassica oleraceaPopulus trichocarpa29.4221.9783.22143forward
CNT30328621Brassica oleraceaAsparagus officinalis23.8738.9384.48116forward
CNT30120689Brassica oleraceaCitrus clementina29.4212.5781.82143forward
CNT3036109Brassica oleraceaCucumis melo28.8113.4783.57140forward
CNT30581381Brassica oleraceaEchinochloa crusgalli30.6653.682.55149forward
CNT30496270Brassica oleraceaDigitaria exilis29.0114.2982.98141forward
CNT30725365Brassica oleraceaLupinus angustifolius30.049.0180.14146forward

Expression of CNT30236263

Peptides detected in this lncRNA

>peptide 1 (50 aa)
YLAGVLPSNTGEPFDGESTESCKHCPSPVDQLTLSEPLEPKDLTVRLKRG*

>peptide 2 (44 aa)
TLPASCQVTPVSHSTERAPRVASIAHLPWISSHSLNLWSPKTSL*

>peptide 3 (94 aa)
MFLAKFWSRESRSNWRYSADFAPGNHRGRSEITVLAFLGAAAFLVPNPNRAVNRPEPELMSETTRVPMIEEAAAAAVEVAAISRVCLLFSTFVSC

Sequence

>CNT30236263
TACCTTGCCGGCGTCTTGCCAAGTAACACCGGTGAGCCATTCGACGGAGAGAGCACCGAGAGTTGCAAGCATTGCCCATCTCCCGTGGATCAGCTCACAC
TCTCTGAACCTCTGGAGCCCAAAGACCTCACTGTAAGGCTGAAACGGGGTTGACTTGGGGTCAACGGCCTCCGTACGGGTCCCGATCACGTCTCCGGCTA
TGTTCTTGGCTAAGTTCTGGTCCAGAGAGTCGAGATCAAACTGGAGATACTCGGCCGATTTCGCGCCTGGGAACCACAGAGGCCGGTCTGAGATAACCGT
CTTAGCCTTCTTGGGAGCAGCGGCTTTCTTGGTCCCGAATCCAAACCGGGCTGTGAACCGGCCTGAACCGGAGTTGATGTCGGAAACCACCCGAGTACCC
ATGATAGAAGAAGCAGCAGCGGCAGCTGTTGAAGTGGCGGCCATCTCCAGAGTTTGTTTGTTGTTTAGCACGTTTGTGAGTTGTGA