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Detailed information on CNT30387274


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694831Triticum turgidumOryza sativa82.3727.1788.35369forward
CNT30672010Triticum turgidumSetaria viridis22.9917.4997.09103forward
CNT30520322Triticum turgidumSetaria italica27.6811.0497.58124forward
CNT30640553Triticum turgidumNymphaea colorata27.4615.2890.24123forward
CNT30526451Triticum turgidumPhaseolus vulgaris28.3511.9896.85127forward
CNT30708158Triticum turgidumGlycine max27.915.0886.4125forward
CNT30179479Triticum turgidumSecale cereale66.9643.3599300forward
CNT30290078Triticum turgidumTriticum aestivum66.7439.1499.33299forward
CNT30562752Triticum turgidumActinidia chinensis22.998.1484.47103forward
CNT30236263Triticum turgidumBrassica oleracea26.1224.0783.76117forward
CNT30554380Triticum turgidumOryza glaberrima27.6811.2296.77124forward
CNT30244332Triticum turgidumAvena sativa63.1734.8191.52283forward
CNT30454075Triticum turgidumSaccharum spontaneum27.913.6998.4125forward
CNT30133575Triticum turgidumLolium perenne54.2438.2192.59243forward
CNT3013737Triticum turgidumZea mays24.3323.3992.66109forward
CNT30680618Triticum turgidumTriticum urartu66.9631.2299.67300forward
CNT30340460Triticum turgidumEragrostis tef27.914.7196125forward
CNT30478099Triticum turgidumArabidopsis halleri21.4313.5885.4296forward
CNT30596509Triticum turgidumOryza meridionalis27.468.0996.75123forward
CNT30328621Triticum turgidumAsparagus officinalis23.4435.2389.52105forward
CNT30120689Triticum turgidumCitrus clementina25.8910.1982.76116forward
CNT30581058Triticum turgidumEchinochloa crusgalli52.924.2888.61237forward
CNT30496270Triticum turgidumDigitaria exilis27.6812.5697.58124forward
CNT30117066Triticum turgidumOryza nivara32.1421.1193.06144forward
CNT30556732Triticum turgidumPanicum hallii43.532587.18195forward

Expression of CNT30387274

Peptides detected in this lncRNA

>peptide 1 (54 aa)
VHEVETTLRTLPASCQVTPVSHSTVRAPRVASMAQRPWMSSHSRNLWRPKGSKP*

>peptide 2 (32 aa)
MRPFCGAGSASRVPRNVLAAAATDEAMAARSS*

Sequence

>CNT30387274
ACGTGCATGAGGTCGAGACGACGTTGCGTACCTTGCCGGCGTCCTGCCAGGTGACGCCGGTGAGCCACTCGACGGTGAGGGCGCCGAGGGTGGCGAGCAT
GGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAACCTCTGGAGGCCGAAGGGGTCGAAGCCGTAGTCGCCGACGAGCGTGCCGTCGAGGTACTCGGGC
GCCTGCGCGCCGGGGAACCACAGCGGCCGGTCGGTGGTCGGGGGCGCCTTGGCCTTCTTCGGCGGGGCCTTCTTCTTGCCGAAGCCGAACCGCGCCACGA
TGCGCCCGTTCTGCGGCGCCGGGTCCGCCAGCCGGGTCCCGAGGAACGTGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTGCTCGCTCCTCCTAGCT
TGTCCTCCTCGGCCTTTGCGTGCGTTGAGGTGGCGGGTGGTGCTGTGG