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Detailed information on CNT30244083


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Avena sativaOryza sativa48.7837.7691.63239forward
CNT3020107Avena sativaCitrullus lanatus25.9211.185.04127forward
CNT30562752Avena sativaActinidia chinensis32.2412.4987.97158forward
CNT30428948Avena sativaPapaver somniferum25.717.4880.95126forward
CNT30120689Avena sativaCitrus clementina26.5311.4282.31130forward
CNT3036109Avena sativaCucumis melo25.3111.9382.26124forward
CNT30102551Avena sativaOryza rufipogon48.7825.8191.63239forward
CNT30581265Avena sativaEchinochloa crusgalli48.7845.8793.72239forward
CNT30496270Avena sativaDigitaria exilis20.6110.2397.03101forward
CNT30117066Avena sativaOryza nivara24.4917.697.5120forward
CNT30604352Avena sativaOryza punctata51.2243.5890.04251forward
CNT30556500Avena sativaPanicum hallii23.6719.7399.14116forward

Expression of CNT30244083

Peptides detected in this lncRNA

>peptide 1 (72 aa)
KIDVQVDALSHHWFIFYKSPSPSSCPRPALIKKGCPSHHSSYKTKPRSYTDYAFVHLAAELTEPYTLLDDRD*

>peptide 2 (61 aa)
MVVCSGSLRWVAQLLSGPLPVAAACTAKPRKATMARRACLISASCRVSFFSGSAARPSGSK*

>peptide 3 (60 aa)
MSLSSLVIQNQTTFVHGLRVRPSCSRAYRTVYTARRPRLATDRALKRSPRCRRWWCAAGR*

Sequence

>CNT30244083
TCAAGATTGATGTACAGGTGGATGCATTAAGTCACCATTGGTTCATATTTTACAAATCTCCAAGTCCCAGCAGCTGTCCTAGACCTGCATTAATCAAGAA
AGGATGTCCCTCTCATCACTCGTCATACAAAACCAAACCACGTTCGTACACGGACTACGCGTTCGTCCATCTTGCAGCCGAGCTTACAGAACCGTATACA
CTGCTCGACGACCGAGACTAGCGACCGACCGCGCGCTTAAGAGGAGCCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAG
TTGTTGAGTGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGGG
TTTCCTTCTTCTCAGGGTCCGCCGCGAGGCCCAGCGGGTCGAAGTAGGAGCCGCCGGGGTACGACGACCCGTCAATCAGCTCCACCTGCA