CANTATAdb - search

Detailed information on CNT30520407

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3020107	Setaria italica	Citrullus lanatus	20.32	11.1	85.04	127	forward
CNT30620951	Setaria italica	Cajanus cajan	20.96	12.6	85.5	131	forward
CNT30120689	Setaria italica	Citrus clementina	20.8	11.42	82.31	130	forward

Expression of CNT30520407

Peptides detected in this lncRNA

>peptide 1 (40 aa)
SLVHILQITSPHQQALLINETSINKLSDRSSHHTLSLITK*

>peptide 2 (61 aa)
MVVWSGSLRWVAQLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSAARPSGSK*

Sequence

>CNT30520407
TCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACTATCGGATCGATCTTCCCACCATA
CCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTAATTAATTCAAGAACACGTTTCGA
TCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGA
GCGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTT
CTTCTCCGGGTCGGCCGCCAGGCCGAGCGGGTCGAAGTAGGAGCCGCCCGGGTAGAGCCTCTTCTCCGGGCCGAAGACCTCGCTGTAGGGCTGGAACGGG
GTGGACTTGACGTCGGAGGACTCGAAGCGGGTGCCCAGGAATGTGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTGCTGCTCCTCCTCCTCCTCCTG
GGTGTGCTGAGAGCGTCAGGTGGTG