« Back to Nicotiana attenuata search


Detailed information on CNT30502928


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513329Nicotiana attenuataJuglans regia34.8419.1682.11123forward
CNT30375654Nicotiana attenuataArabidopsis thaliana48.7335.5480.81172forward
CNT30276136Nicotiana attenuataChenopodium quinoa24.6516.8987.3687forward
CNT3020107Nicotiana attenuataCitrullus lanatus33.7110.482.35119forward
CNT30401900Nicotiana attenuataBeta vulgaris34.5612.4786.89122forward
CNT30526506Nicotiana attenuataPhaseolus vulgaris44.7613.3386.08158forward
CNT30485914Nicotiana attenuataOlea europaea48.1621.2281.76170forward
CNT30708177Nicotiana attenuataGlycine max35.4111.8885.6125forward
CNT30213985Nicotiana attenuataHelianthus annuus35.4123.5484125forward
CNT30620951Nicotiana attenuataCajanus cajan35.4112.0284.8125forward
CNT30360911Nicotiana attenuataLactuca sativa41.3632.0982.19146forward
CNT30428948Nicotiana attenuataPapaver somniferum39.098.1986.23138forward
CNT30120689Nicotiana attenuataCitrus clementina38.8112.0484.67137forward
CNT3036109Nicotiana attenuataCucumis melo35.4112.0381.6125forward
CNT30725365Nicotiana attenuataLupinus angustifolius34.567.5387.7122forward

Expression of CNT30502928

Peptides detected in this lncRNA

>peptide 1 (64 aa)
LISFSLCNIKDEKHDELRLTTAFDIAFSLECQMLQFLQEAEEYIIYVKPSSQLDRAEKTRCREW*

Sequence

>CNT30502928
ATTTGATATCATTTTCCTTATGCAACATTAAGGATGAAAAACATGACGAACTTAGATTAACAACAGCGTTTGATATTGCCTTCTCCTTGGAGTGTCAAAT
GTTACAATTTTTACAAGAAGCAGAAGAATATATAATATACGTAAAACCATCCTCTCAACTAGATCGAGCTGAAAAAACAAGGTGTCGAGAATGGTAGTGT
GAAGTGGGTCACTCAAGTGGGTAACCCAATTGTTAAGTGGGCCTTTTCCAGTAGCAGCAGCTTGGACAGCAAAGCCCAAGAAGGCAACCATAGCAAGACG
AGCATGCTTGATCTCAGCAAGTTGAAGTTTGGCCTTTTTCTCCGGGTCAGCAG