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Detailed information on CNT30673103


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 2e-80

BLAST vs NONCODE:
NONPOPT000587, E-value = 2e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30729048Setaria viridisCorchorus capsularis50.1842.6883.93280forward
CNT30218668Setaria viridisKalanchoe fedtschenkoi44.0963.5783.74246forward

Expression of CNT30673103

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

>peptide 2 (38 aa)
LLGQYNTNDSKGQIKNHNTEATKHDKRSRPKASSQRAP*

>peptide 3 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSTNTERGSGTPMA*

Sequence

>CNT30673103
ACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAAGCTTC
TTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCA
GCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATGATGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTAATAATCTTGAGGA
TCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGACCTGGACGATGGCGCGGCG
AGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAACCTTGGTTGGGTCCTTGCCGGAGAAAGCACCACCA
CCGTGGGCTCCCCAGCCACCATAGGTGTCGACTGCGGCCATCTTTTCTGATCTGCAGC