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Detailed information on CNT30367696


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 1e-87

BLAST vs NONCODE:
NONPOPT000587, E-value = 2e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672532Sorghum bicolorSetaria viridis69.8862.892.35601forward
CNT30521184Sorghum bicolorSetaria italica73.2627.492.54630forward
CNT30641080Sorghum bicolorNymphaea colorata36.1634.7583.92311forward
CNT30549537Sorghum bicolorIpomoea triloba50.765.4782.11436forward
CNT30372626Sorghum bicolorArabidopsis thaliana49.1965.9979.43423forward
CNT30729048Sorghum bicolorCorchorus capsularis33.7244.2182.07290forward
CNT30524807Sorghum bicolorPhaseolus vulgaris42.5641.580.6366forward
CNT30471290Sorghum bicolorSaccharum spontaneum81.8678.494.89704forward
CNT30432398Sorghum bicolorPapaver somniferum49.6535.1781.5427forward
CNT30101941Sorghum bicolorOryza rufipogon50.3551.8690.99433forward
CNT30496713Sorghum bicolorDigitaria exilis52.7930.1592.73454forward
CNT30116792Sorghum bicolorOryza nivara17.3323.1793.96149forward

Expression of CNT30367696

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMIMPGLKSKFSFTILRISLSGIVPVPYVSTKTERGSGTPMA*

Sequence

>CNT30367696
TCTCAAAGTGGCTGTAGCCTGTAGCTTCTTTCATTGTTTTAAGCATTACATAACCAGTAAAACCAGAAATAATCCTCTAGGTAAATAAGCAGACACAATA
AGACCCTCACAAGTACCACTTATTAGGACAGTACAAGTACAAATGATAAGCAAGGGGCAGATCAAGAATCACAACATATAGAAGCCAGATAAAACATGAT
AAAGCGCAGCAGACCAAAAGCTTCTTCTGAAAAAGTGAGGGTGCCTTAGGCAGAAGGCTTCTCCGCCTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCA
GGGTCGTCCCTTCCAAAGTGGCCGTAGGCCGCCGTCTTGAGGTAGCGCCCGTTGCCACCTTTCTTGAGGTCGAGGTTGATGATGATCATGCCAGGCCTGA
AGTCAAAGTTCTCCTTCACAATCTTGAGGATCTCCTTGTCAGGAATCGTGCCGGTGCCATACGTGTCAACAAAGACGGAGAGAGGCTCAGGCACACCGAT
GGCGTAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCGTTGGCAACAATGCTCTTGGCAGCCTGCCTTGCGATGTAGGCTCCACTGCGGTCGACCTTG
GTTGGGTCCTTGCCGGAGAAAGCGCCACCACCGTGGGCTCCCCAGCCACCATAGGTGTCAATGATGATCTTCCGGCCAGTAAGACCAGCATCACCGTGAG
GTCTCGCAAGCAACCTTGCTGTCAGGGTCCTCAGCAAGGCAAGCGTCAAGAACAGCATCTGAGACCTGGTCGCAGAGCTTGTCTGGGTGTCCCTCATTCA
CAGACTCCGAGGTGAAGAGGAAGGTGTCGACTGCGGCCATCTTCTCTGATCTGCAGCAGA