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Detailed information on CNT30626924


BLAST search results

BLAST vs Swiss-Prot:
sp|Q56TU3|METK2_DAUCA, E-value = 2e-127

BLAST vs NONCODE:
NONPOPT000587, E-value = 9e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521128Daucus carotaSetaria italica19.7534.0283.94249forward
CNT30549537Daucus carotaIpomoea triloba22.8443.2484.38288forward
CNT30515028Daucus carotaJuglans regia27.3640.6482.61345forward
CNT30698521Daucus carotaQuercus lobata21.8949.283.33276forward
CNT30372626Daucus carotaArabidopsis thaliana20.5440.4182.63259forward
CNT30729048Daucus carotaCorchorus capsularis16.130.9584.24203forward
CNT30381524Daucus carotaManihot esculenta27.642.0884.2348forward
CNT30402638Daucus carotaBeta vulgaris27.7627.3284.86350forward
CNT30490001Daucus carotaOlea europaea20.1451.2181.5254forward
CNT30712486Daucus carotaGlycine max23.3936.8382.71295forward
CNT3047443Daucus carotaPrunus dulcis27.1228.6782.46342forward
CNT30188757Daucus carotaSecale cereale27.1277.280.99342forward
CNT30225130Daucus carotaHordeum vulgare17.7653.0883.04224forward
CNT3086108Daucus carotaVigna radiata16.5720.7883.25209forward
CNT30508528Daucus carotaSolanum lycopersicum12.4530.2583.44157forward
CNT3059692Daucus carotaArabidopsis lyrata7.331.8385.8792forward
CNT3013982Daucus carotaZea mays21.0291.3884.15265forward
CNT30218668Daucus carotaKalanchoe fedtschenkoi16.7354.5284.83211forward
CNT30477100Daucus carotaArabidopsis halleri7.7724.8186.7398forward
CNT30620812Daucus carotaCajanus cajan22.5222.8783.1284forward
CNT30597163Daucus carotaOryza meridionalis13.1627.9583.73166forward
CNT30432398Daucus carotaPapaver somniferum21.0921.9184.21266forward
CNT30570759Daucus carotaVitis vinifera42.2794.8483.86533forward
CNT3055164Daucus carotaAmborella trichopoda26.8829.4880.83339forward
CNT3022562Daucus carotaPopulus trichocarpa27.622.2583.62348forward
CNT3036529Daucus carotaCucumis melo13.2438.9385.03167forward
CNT30174554Daucus carotaVigna angularis25.1444.1581.7317forward

Expression of CNT30626924

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MHLRASPPMTKRPEGFKWKMVFSSKYLAGTTGLMTCSLRSAAISSLVTVSSC*

>peptide 2 (89 aa)
MRMVWTRIGTMAPLSLWYSTVTWVFPSGLNHAQVPFLRTSVRRAPSLVARTWLSGINSGVSSVAYPNQHHQTQTQSHGRYHEQSSRNQQ*

>peptide 3 (30 aa)
MTMLVLVQVSQATLLSGSCNKQASSTASEI*

>peptide 4 (90 aa)
MLSGDEDGVDTDRDHGTIVIVVFHSNLGLSIRPQPCAGTILTDFSQASTKLGCKNMAKWHQLRGLISSIPKPTSSDTNPISRQVSRTIFS*

Sequence

>CNT30626924
CTGAATTCCAAACAAAGATCAGTTTGCTTTGCGACACTTCTGTTAACTTAAAATTATAGTATCATTTCATCAGCAAAACAAGGAGAGGGATAATTACTTA
TCAGCTTACACCATGTAATTCAACTTGCTAACTCTAGAAAAGTAAAATACAATTCTTTTGGTTCATATAGAAAAACAAAATATTACTTATTAATTAAATA
ACACATGAGCCAATAGGCATAACAATGAATCAAAGGCAGAGGGCAGGCAATACCAAAAAGACCAGGGTGAAGTACTGATCAACAGCTTAAGCTTTCTCCC
ATTTGAGAGGCTTCACAACTTCCCAGGTGAAGTCAGCGTCGTCTCTTCCGAAGTGGCCATAGGCAGCGGTCTTCAAGAACCTGCCGTTGCCCCCTCTCTT
GAGGTCAAGGTTGATAGAGATCATTCCGGGTCTGAAGTCGAAGGTCTCCTTCACAATCTGCAGAATCTCTCTGTCGGGGATCTTTCCAGTTCCATATGAG
TCTACGAAAACAGACAAAGGCTCGGGAACACCAATAGCATATGAAACCTGAACAATGCACCTACGTGCAAGTCCACCAATGACAAAACGGCCAGAAGGGT
TCAAGTGGAAGATGGTCTTCTCATCCAAGTACTTAGCAGGTACAACAGGCTTAATGACGTGCTCCTTAAGATCAGCTGCGATCTCATCATTAGTGACAGT
CTCATCATGCTGAGTGGAGATGAGGATGGTGTGGACACGGATCGGGACCATGGCACCATTGTCATTGTGGTATTCCACAGTAACCTGGGTCTTTCCATCA
GGCCTCAACCATGCGCAGGTACCATTCTTACGGACTTCAGTCAGGCGAGCACCAAGCTTGGTTGCAAGAACATGGCTAAGTGGCATCAACTCCGGGGTCT
CATCAGTAGCATACCCAAACCAACATCATCAGACACAAACCCAATCTCACGGCAGGTATCACGAACAATCTTCTCGTAATCAACAGTAGCCTTGGTGGTG
ATCTCTCCGAAAACCATGACCATGTTGGTCTTGGTGCAAGTTTCACAAGCCACCTTGCTCTCAGGATCCTGCAACAAGCAGGCATCAAGCACCGCATCGG
AGATCTGATCGCAAAGCTTGTCGGGATGTCCCTCGTTAACAGACTCAGAAGTAAACAAAAAGGTCTCCATTTCTGAGTACCTTGAGAGAGGAGAGAGAGT
AAGGGCTTGTTTGGGTGAGTAATAAGCAGACTCTCCTCTAAAGCAAAGGTATGAGAATGGC