Detailed information on CNT30520870


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 5e-58

BLAST vs NONCODE:
NONTPRT001916, E-value = 3e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30729048Setaria italicaCorchorus capsularis41.1842.6883.57280forward
CNT30490001Setaria italicaOlea europaea19.2626.4183.97131forward
CNT30508545Setaria italicaSolanum lycopersicum26.3243.2482.68179forward
CNT3066706Setaria italicaLeersia perrieri30.7461.4786.12209forward
CNT30368076Setaria italicaSorghum bicolor82.3551.4289.64560forward
CNT30116702Setaria italicaOryza nivara29.2619.3887.94199forward

Expression of CNT30520870

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIARGRSRITTQKPQNMISAADQKLLLKGRLRQKASPT*

>peptide 2 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSTNTERGSGTPMA*

Sequence

>CNT30520870
GGACTGTTCAAGTAATCACGCATGACAAGATAGAAAGCAGCAGGTCCCCTTCCTTCTCAAAGTAGCCTGCAGCTTCATTCTTTGGTTCACCATTACATAA
ACAGCAAAACCAGAAATAGCAGACAATAATTCCTCCTCTAGGTAAATAACCAGACACAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATAC
AAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACAAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCA
GAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATGATGATCATGCC
AGGCCTGAAGTCGAAGTTCTCCTTAATAATCTTGAGGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGC
ACACCGATGGCATAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGT
CAACCTTGGTTGGGTCCTTGCCGGAGAAAGCGCCACCACCGTGGGCTCCCCAGCCACCATAGGTGTCAATGATGATCTTC