Detailed information on CNT30350310


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 6e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Eragrostis tefOryza sativa20.6448.4689.44142forward
CNT30673694Eragrostis tefSetaria viridis29.0743.293.5200forward
CNT30281438Eragrostis tefChenopodium quinoa40.1224.3479.35276forward
CNT30303678Eragrostis tefTriticum aestivum42.5943.9988.05293forward
CNT30442289Eragrostis tefAegilops tauschii53.257.9187.43366forward
CNT30649241Eragrostis tefRosa chinensis21.0812.7482.76145forward
CNT30687021Eragrostis tefTriticum urartu37.6552.9790.73259forward
CNT30595666Eragrostis tefOryza meridionalis53.0529.2987.12365forward
CNT30150205Eragrostis tefBrachypodium distachyon36.9260.4887.8254forward
CNT30497204Eragrostis tefDigitaria exilis35.0345.0586.31241forward

Expression of CNT30350310

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQCLKRFTIINQRARIHTHLVAQLHRQAAASNATG*

>peptide 2 (33 aa)
MNRDAVPQTLHHHQPTRTNPHTSRRSIAPTGSS*

>peptide 3 (33 aa)
MASLPFLISLSLSSLSDFSSLPNPSGLKIGPPG*

Sequence

>CNT30350310
GTTGGCAATGTTGAGGTAGTATCACGGTAGGAGGAATTGTACATTAATTTACCATGTGCAATACAATATCCGGTCTCAACAAGACGATCAATTGCTATTT
TGTTACAAGCAGCAGGCTGGCGATGCATGAATCGTGATGCAGTGCCTCAAACGCTTCACCATCATCAACCAACGCGCACGAATCCACACACATCTCGTCG
CTCAATTGCACCGACAGGCAGCAGCTAGCAACGCAACGGGCTAGAAAGAAAGGCAGTAAAGCGCAATCTTTCTAGTGGAACTTGAGGCTGGTGAGGACGT
TGTTGTTGACGGGGTCGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTGAGCGACTTCTCGTCCTTGCCGAATCCGAGCGG
GTTGAAGATCGGGCCGCCGGGGTAGGCCGGGTCGCCGGAGCCGCCGAGGAACTTCTCGAGGCCGAGGAAGTACTGCTTGCCCATGGAGCCCGGGTTGTAC
CAGTCCTGCAGCCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATCTCGAAGACGAAGAGCGTGTAGGGGTCGGCCCAGTAGTTGTAGGTGCCGGCGGGCG
GGATGACGCCCGTCTTGAACCACGGCAGCGCTGTCTCCGCCGGGATCAGGCCCAGCTTGCCGAACACCTCCGGGGCGATGGAGCCCGC