Detailed information on CNT30625096


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBRAT004778, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30649241Daucus carotaRosa chinensis25.3421.2781.82242forward
CNT3027741Daucus carotaTheobroma cacao13.7229.9887.79131forward

Expression of CNT30625096

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MGLQGMLGLRIQLGLSLSPRNIVFPLILDCTSLVISCALQIP*

>peptide 2 (42 aa)
MTPVWNHGKAVSAGMSPSFPKISGAIAPAAPNMAKRPLIISP*

>peptide 3 (78 aa)
MDFSSFPNPRGLKNGPPGYAGSPDPARPFSKPKKYCFPIDPGLYQSCNLLCSANPMRAISRTKMCSHQPSSCKFLLEE*

>peptide 4 (42 aa)
MNPPVPSGSESPKGSNPKSPGRLCKHCHDQQSVNKHVLRMHA*

>peptide 5 (34 aa)
MVQKVLKWSNACDQSLDEVTQYCQHSKSPILNLL*

>peptide 6 (38 aa)
LGVVKMQLMFGCIINNSFSLTWLVCDDENPILRHNLLT*

Sequence

>CNT30625096
ATTAGGTGTTGTGAAAATGCAGTTGATGTTTGGTTGCATTATAAACAACTCCTTTTCCCTTACATGGCTAGTTTGTGATGACGAAAACCCTATCTTAAGA
CATAACTTACTGACATAGATTATTTAAATATTCTCAAATTCAAACTAAATAGACTTGTGGAAAATATGCCCGCGGTAGTTGGGCACACTTCCTAGTATGA
GATAAAATTGACAAGGTGGTAAATTCACAATGTGGGTTTAAGTTCCAGAGTTCTAGTGGAACTTAAGGCTAGTCAAGACATTGTTGTTAACAGGATCAGC
CAAATGGTCCAGAAGGTTTTGAAGTGGTCCAACGCCTGTGACCAAAGCTTGGATGAAGTAACCCAATATTGCCAACATAGCAAGTCTCCCATTCTTAACC
TCCTTTAACTTGAGCTCTTTCATGGATTTCTCGTCTTTTCCGAATCCAAGAGGATTAAAAAATGGGCCTCCAGGGTATGCTGGGTCTCCGGATCCAGCTA
GGCCTTTCTCTAAGCCCAAGAAATATTGTTTTCCCATTGATCCTGGATTGTACCAGTCTTGTAATCTCCTGTGCTCTGCAAATCCCATGAGAGCCATTTC
TAGGACAAAGATGTGTAGCCATCAGCCCAGTAGTTGTAAGTTCCTGCTGGAGGAATGACTCCTGTTTGGAACCATGGCAAGGCTGTTTCAGCTGGAATGA
GCCCAAGTTTTCCCAAAATCTCAGGGGCTATAGCTCCTGCTGCACCCAACATGGCAAAACGACCATTGATTATCTCTCCGTAGGCTAGCCATTTGGGCTC
GATGAATCCTCCGGTTCCTTCAGGGTCGGAAAGTCCCAAGGGGTCGAATCCAAAGTCACCTGGAAGGCTGTGTAAGCATTGTCATGATCAGCAATCAGTA
AATAAACATGTTCTTCGCATGCATGCCTAGTAGTGTAATTAGTTAATAGTTACCT