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Detailed information on CNT30146039


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 8e-125

BLAST vs NONCODE:
NONBRAT004778, E-value = 4e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30649241Medicago truncatulaRosa chinensis47.6331.8178.18362forward
CNT30624860Medicago truncatulaDaucus carota81.3271.6181.23618forward
CNT30621314Medicago truncatulaCajanus cajan47.6328.7183.98362forward
CNT30573352Medicago truncatulaVitis vinifera33.4238.9680.31254forward

Expression of CNT30146039

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPFPSQRVCNCLPSSCMFPLVESRRFGTKGVLFPRELNLLCQEFQVL*

>peptide 2 (37 aa)
MLVRRNLQALSQVLRSIVFPWSQDCTNLGIFCVLQIP*

>peptide 3 (38 aa)
MNPPVPSGSESPRGSNPKSPGRLQVMMRPNKVNFILDT*

Sequence

>CNT30146039
AACCAACAAGAGCAAAGAAAAGAATATATCATATATATAATACATTCATTTAGTGGAACTTGAGACTGGTCAAGATGTTGTTGTTGACAGGGTCAGCCAA
ATGATCTAAGAGGTTTTGGTATGGTCCAACTCCTGTAACAAGAGCTTGAATAAAGTAACCCAATATTGCCAACATTGCTAACCTTCCATTCTTAACTTCC
TTCAGCTTTAATTCTTTCAATGATTTCTCATCTTTACCAAAACCAAGAGGGTTAAATATAGGTCCACCAGGGTATGCTGGTTCGCCGGAACCTCCAAGCC
CTTTCTCAAGTCCTAAGAAGTATTGTTTTCCCATGGAGCCAGGATTGTACCAATCTTGGAATCTTCTGTGTTCTGCAAATCCCATGAATGCCATTTCCAT
CACAAAGAGTGTGTAATTGTCTGCCCAGTAGTTGTATGTTCCCGCTGGTGGAATCACGCCGGTTTGGAACCAAGGGAGTGCTGTTTCCGCGGGAATTAAA
CCTGCTTTGCCAAGAATTTCAGGTGCTATAGCTCCGGCTGCTCCCAACATTGCAAATCGGCCGTTGATTATCTCACCGTATGCTAACCATCTTGGTTCAA
TGAATCCACCGGTTCCTTCGGGATCTGAAAGTCCTAGAGGGTCAAATCCAAAGTCACCCGGAAGGCTGCAAGTGATGATGAGGCCAAATAAAGTCAATTT
CATACTTGACACATAGTGTTACTCAACAAAGTTGCATGCATATCTACATGTTGTATAGTT