Detailed information on CNT30557361


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 5e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Panicum halliiOryza sativa25.7248.4689.44142forward
CNT3045167Panicum halliiPrunus dulcis21.9234.2881.82121forward
CNT30649241Panicum halliiRosa chinensis25.1812.2181.29139forward
CNT30687021Panicum halliiTriticum urartu53.0859.9289.76293forward
CNT30150205Panicum halliiBrachypodium distachyon47.6462.6287.07263forward
CNT30497204Panicum halliiDigitaria exilis45.8347.2986.96253forward

Expression of CNT30557361

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MASMASLPFLISLSLSSFISFSVLPKPSGLKSGPPG*

>peptide 2 (38 aa)
QTPLPSASQPAYEHTSIDHLSPPTTTTGGGTPVMHRTV*

>peptide 3 (33 aa)
LKPLFHQPASQHMNTHRSITSRLPLQQQAAAHP*

Sequence

>CNT30557361
CTCAAACCCCTCTTCCATCAGCCAGCCAGCCAGCATATGAACACACATCGATCGATCACCTCTCGCCTCCCACTACAACAACAGGCGGCGGCACACCCGT
GATGCACCGCACGGTCTAGTGGAACTTGAGGCTGGTGAGCACGTTGTTGTTGACGGGCCCCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCCTG
CCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGGTCTTGCCGAAGCCGAGCGGGTTGAAGAGCGGGCCCCCGGGGTAGGAGGGGTCGC
CGGAGCCGGCGAGGAACTTCTCGAGGCCGAGGAAGTACTGCTTGCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGGCGGCGGTGCTCGGCGAAGCCCAT
GAGCGCCATGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCAGTAGTTGTAGGTAGGAGAGGGACTGCTTGGACGCGAACCACAGCTGCCTGTCGGCGCC
TTGCTGCAAGAGAAACAAGATTCAGTTCATTATCCATTCACGGATCAGTAGC