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Detailed information on CNT3040126


BLAST search results

BLAST vs Swiss-Prot:
sp|P27522|CB13_SOLLC, E-value = 8e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281438Marchantia polymorphaChenopodium quinoa31.2218.2578.74207forward
CNT30405505Marchantia polymorphaBeta vulgaris18.8533.8881.6125forward
CNT30486017Marchantia polymorphaOlea europaea22.4715.0783.22149forward
CNT30125939Marchantia polymorphaPhyscomitrium patens32.1363.7784.04213forward
CNT30543417Marchantia polymorphaBrassica napus40.8739.4580.07271forward
CNT30233367Marchantia polymorphaBrassica oleracea40.8730.4279.7271forward
CNT3060116Marchantia polymorphaArabidopsis lyrata20.6628.6680.29137forward
CNT30259051Marchantia polymorphaBrassica rapa40.8733.9280.07271forward
CNT30649241Marchantia polymorphaRosa chinensis25.1914.6780.84167forward

Expression of CNT3040126

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MIQSGDDRLDEVSEDCEHGQASVLHFLHFQVLHRLLVPSEAQEVEQRTSGVRWVT*

>peptide 2 (66 aa)
MKYPRTASMARRPFFTSFTFRSFIDFSSLPKPKKLNRGPPGYAGSPDPPNTFSKPKKYCLPMDPGL*

>peptide 3 (31 aa)
MGWRSLGGSDQSFRRFLGRWLRQLRAWQIAR*

>peptide 4 (29 aa)
GFINPKIGGMPEQWTVSCSSPSSGKKPIR*

>peptide 5 (53 aa)
MDSKLFKPVVWKETDTLSHRIQRCAKCCSASTERGGRTANLYNTERSDMISRS*

>peptide 6 (36 aa)
MAVSWGIRPIFPKISGAMAPAAPSMANRPLMISAYLN

Sequence

>CNT3040126
GGCTTTATAAATCCTAAAATCGGAGGCATGCCAGAACAATGGACAGTAAGCTGTTCAAGCCCGTCGTCTGGAAAGAAACCGATACGTTAAGTCATCGAAT
ACAAAGATGTGCTAAATGTTGCTCAGCCAGCACGGAGAGGGGTGGTCGTACAGCAAATCTTTACAACACGGAGAGGAGTGACATGATAAGTCGGTCATGA
TACAAAGTGGTGACGATCGCTTGGATGAAGTATCCGAGGACTGCGAGCATGGCCAGGCGTCCGTTCTTCACTTCCTTCACTTTCAGGTCCTTCATCGACT
TCTCGTCCCTTCCGAAGCCCAAGAAGTTGAACAGAGGACCTCCGGGGTACGCTGGGTCACCTGATCCTCCCAACACCTTCTCGAAACCCAAGAAGTATTG
CTTGCCCATGGATCCGGGTTTGTAGTAATCTTGTGCACGTCTGTGCTCGGCGAATCCCATCAGCGCCATCTCGAGAACGAACAGTGTGTAGGGGTCAGCC
CAGTAGCTGTATTGTCCGAGAGGTGGGATAACTCCTGTTTGGAACCATGGGATGGCGGTCTCTTGGGGGATCAGACCAATCTTTCCGAAGATTTCTGGGG
CGATGGCTCCGGCAGCTCCGAGCATGGCAAATCGCCCGTTGATGATCTCGGCGTATCTCAACC