Detailed information on CNT30174554


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W3Y4|METK_PHALU, E-value = 4e-174

BLAST vs NONCODE:
NONPOPT000587, E-value = 9e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Vigna angularisSetaria viridis81.6260.1681.74586forward
CNT30521128Vigna angularisSetaria italica50.2849.3282.27361forward
CNT30515028Vigna angularisJuglans regia51.6743.785.44371forward
CNT30402638Vigna angularisBeta vulgaris62.6735.1385.56450forward
CNT30628634Vigna angularisVigna unguiculata59.6159.4483.18428forward
CNT30158121Vigna angularisPistacia vera60.3169.2882.68433forward
CNT30294498Vigna angularisTriticum aestivum45.2640.6880.92325forward
CNT30662024Vigna angularisTriticum dicoccoides52.9274.879.47380forward
CNT30650534Vigna angularisRosa chinensis81.7562.9883.3587forward
CNT30626924Vigna angularisDaucus carota44.1525.1481.7317forward
CNT30620812Vigna angularisCajanus cajan67.2738.8988.61483forward
CNT30429132Vigna angularisPapaver somniferum67.5530.5880485forward
CNT30570674Vigna angularisVitis vinifera57.143.4382.44410forward
CNT3025883Vigna angularisPopulus trichocarpa62.6740.0783.78450forward

Expression of CNT30174554

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MFTRTLQLSASSPTSSEMKPMFLQVSRTIFS*

>peptide 2 (61 aa)
KRPEGFKWKMVFSSRYFSGITGLITCSFRSAAISSFVTVSSCCVEMSTVWTRTGTMAPLSL*

>peptide 3 (38 aa)
MSHKQPCSLDLAQGRRQEQHRRFGRRACLGVPRSRTRR*

>peptide 4 (89 aa)
TARGVQVENGLLIKVLLGNHGLDHVLFQISSNFIIRDSLVMLCGDEHGVDTNWNHGTLVIVILNSHLGLAIRSEPRAGTVLPNLSETSP*

>peptide 5 (63 aa)
MLALVVISPKTMTKLVLVHVSQATLLSGSCSRQASRTASEIWSQSLSGCPSFTDSEVNRNVSAI

Sequence

>CNT30174554
AAACGGCCAGAGGGGTTCAAGTGGAAAATGGTCTTCTCATCAAGGTACTTCTCGGGAATCACGGGCTTGATCACGTGCTCTTTCAGATCAGCAGCAATTT
CATCATTCGTGACAGTCTCGTCATGTTGTGTGGAGATGAGCACGGTGTGGACACGAACTGGAACCATGGCACCCTTGTCATTGTAATACTCAACAGTCAC
TTGGGTCTTGCCATCAGGTCTGAGCCAAGGGCAGGTACCGTTCTTCCGAACCTCAGTGAGACGAGCCCCTAGTTTGGTTGCGAGGACGTGGCTCAAGGGC
ATCAATTCAGGGGTCTCGTCGGTGGCATAGCCGAACATGTGACCCTGGTCGCCGGCACCGATTTCTTCAGGTCTTTTGGTGAGGTGGCCATGCACGCCCT
GGGCAATATCAGGACTCTGCTGCTCAATGTTCACAAGGACCTTGCAGTTGTCGGCATCAAGTCCCACATCGTCTGAGATGAAGCCGATGTTCCTGCAGGT
GTCACGCACGATCTTCTCGTAGTCAATGTTGGCCTTGGTGGTGATTTCTCCGAAGACCATGACCAAGTTGGTTTTGGTGCATGTCTCACAAGCAACCTTG
CTCTCTGGATCTTGCTCAAGGCAGGCGTCAAGAACAGCATCGGAGATTTGGTCGCAGAGCTTGTCTGGGTGTCCCTCGTTCACGGACTCGGAGGTAAACA
GAAATGTCTCTGCCATCT