« Back to Secale cereale search


Detailed information on CNT30188757


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4LB22|METK3_HORVU, E-value = 5e-105

BLAST vs NONCODE:
NONPOPT000587, E-value = 3e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674395Secale cerealeSetaria viridis58.4733.988.8259forward
CNT30515028Secale cerealeJuglans regia85.7844.7681.84380forward
CNT30373104Secale cerealeArabidopsis thaliana58.0130.6384.82257forward
CNT30381460Secale cerealeManihot esculenta94.5845.5982.1419forward
CNT30402638Secale cerealeBeta vulgaris98.6534.1183.98437forward
CNT30628634Secale cerealeVigna unguiculata97.0759.7279.3430forward
CNT30194995Secale cerealePisum sativum28.4413.2490.48126forward
CNT30712018Secale cerealeGlycine max75.1762.7181.68333forward
CNT3047443Secale cerealePrunus dulcis81.7230.3482.32362forward
CNT30225130Secale cerealeHordeum vulgare58.0160.993.39257forward
CNT30172560Secale cerealeTrifolium pratense58.4738.0383.01259forward
CNT30144304Secale cerealeMedicago truncatula51.2435.384.58227forward
CNT30441436Secale cerealeAegilops tauschii56.2149.1195.18249forward
CNT30626924Secale cerealeDaucus carota77.227.1280.99342forward
CNT30686785Secale cerealeTriticum urartu61.8527.1397.08274forward
CNT30363950Secale cerealeSorghum bicolor56.2121.4888.35249forward
CNT30358838Secale cerealeLactuca sativa29.5719.1583.97131forward
CNT3055164Secale cerealeAmborella trichopoda90.2934.7882.25400forward
CNT3022562Secale cerealePopulus trichocarpa97.9727.7581.8434forward
CNT3035650Secale cerealeCucumis melo74.2724.4182.98329forward
CNT30174546Secale cerealeVigna angularis75.8543.9282.44336forward
CNT30557997Secale cerealePanicum hallii20.7718.6689.1392forward
CNT30113329Secale cerealeFicus carica49.2120.2486.7218forward

Expression of CNT30188757

Peptides detected in this lncRNA

>peptide 1 (90 aa)
AAVGSPATVGVDDDLAAGETGVTVRSADDEAARRVQVEDGVLIKVLPGNHRLDDVLLEVRGNLVVGDGLIMLGGDEDGVHTNRYHGTILV*

>peptide 2 (69 aa)
MTKRPDGFRWKMVFSSRYFPGITGLMTCSLRSAAISSLVTVSSCWVEMRTVCTRTGTMAPSSFRYSTVT*

Sequence

>CNT30188757
GCCGCCGTGGGCTCCCCAGCCACCGTAGGTGTCGATGATGATCTTGCGGCCGGTGAGACCGGCGTCACCGTGAGGTCCGCCGATGACGAAGCGGCCAGAC
GGGTTCAGGTGGAAGATGGTGTTCTCATCAAGGTACTTCCCGGGAATCACCGGCTTGATGACGTGCTCCTTGAGGTCCGCGGCAATCTCGTCGTTGGTGA
CGGTCTCATCATGCTGGGTGGAGATGAGGACGGTGTGCACACGAACAGGTACCATGGCACCATCCTCGTTTAGGTACTCGACGGTGACCTGAGTCTTTCC
GTCAGGCCTGACCCAGGCGCAGGTGCCATTCTTGCGGACCTCGGTGAGACGAGCTCCGAGCTTGGTGGCGAGCACGTGGCTGAGAGGCATCAGCTCAGGG
GTCTCGTCGGTGGCATAGCCAAACATGATGCCCTGGTCACCGG