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Detailed information on CNT30650534


BLAST search results

BLAST vs Swiss-Prot:
sp|P93438|METK2_ORYSJ, E-value = 6e-137

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Rosa chinensisSetaria viridis63.0960.3783.84588forward
CNT30521128Rosa chinensisSetaria italica38.9549.5984.85363forward
CNT30374815Rosa chinensisArabidopsis thaliana40.4591.2880.64377forward
CNT30402638Rosa chinensisBeta vulgaris38.9528.3484.85363forward
CNT30628634Rosa chinensisVigna unguiculata33.0542.7884.74308forward
CNT3047442Rosa chinensisPrunus dulcis36.3755.9485.55339forward
CNT30158121Rosa chinensisPistacia vera46.4669.2886.14433forward
CNT3090332Rosa chinensisSolanum tuberosum39.1656.1585.75365forward
CNT30181754Rosa chinensisSecale cereale35.7352.9485.29333forward
CNT30294498Rosa chinensisTriticum aestivum37.8844.1884.99353forward
CNT30225130Rosa chinensisHordeum vulgare31.6569.9181.02295forward
CNT30441680Rosa chinensisAegilops tauschii7.5133.8285.7170forward
CNT30662024Rosa chinensisTriticum dicoccoides37.4568.785.96349forward
CNT3013982Rosa chinensisZea mays15.2448.9783.8142forward
CNT30624603Rosa chinensisDaucus carota36.4851.5287.35340forward
CNT30681758Rosa chinensisTriticum urartu35.4148.3985.15330forward
CNT30571189Rosa chinensisVitis vinifera44.5367.3787.71415forward
CNT3055164Rosa chinensisAmborella trichopoda27.4722.2681.25256forward
CNT3025883Rosa chinensisPopulus trichocarpa41.3134.2887.79385forward
CNT30174554Rosa chinensisVigna angularis62.9881.7583.3587forward
CNT30557997Rosa chinensisPanicum hallii11.0520.8982.52103forward
CNT30113343Rosa chinensisFicus carica20.7154.5288.6193forward

Expression of CNT30650534

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSHRQPCCQDPAQGKHQALRQRSGRTACRGV

>peptide 2 (35 aa)
MFVLVHVSQATLLSGSCSRQASSTASEIWSHSLSGC

>peptide 3 (31 aa)
MLTRTLQLSASRPTSSETNPMLRHVSRTIFS*

>peptide 4 (49 aa)
MAKGHQLRGFISGIAKHVTLVTSTNLLWALGKVTMDTLGNIWALLLNVD*

Sequence

>CNT30650534
GTTTCATTGACATAACAAAAATGAAAGGAATCACAGGTTCATGTTTGAAAGCTAATAACTAATAACATAGATAGCTTCAGTGCCATCAATTTGGACAAAA
TTCTGTTCATTACAGAGACACTGGTGGATGAAAATACAGTAATCCATTAAATAAAATAAGAAAAACAAATAATAGAAAAGACCAGCGATAACGTATGAAA
ATTAGAAATTAGACTCTGAGAACACGCATATTATTCATCCCACTTGATGCAAGCACTGAATGACCGGCACGGCACAATCGAACAATCTCAAGACTGAGGC
TTCTCCCACTTGAGGGGCTTCACAACCTCCCAGGTGAAGTCAGGGTCAGCAGCAATCTCATCATTTGTGACAGTCTCGTCATGCTGGGTGGAGATAAGAA
CAGTGTGGACACGTAGTGGAACCATAGCACCGGCTTCATTCTGGTATTCAACTGTCACCTGGGTCTTGCCATCAGGTCTCAGCCATGCGCAAGTACCATT
CTTTCTAACTTCAGTGAGGCGAGCACCAAGCTTGGTTGCAAGGACATGGCTAAGGGGCATCAACTCAGGGGTTTCATCAGTGGCATAGCCAAACATGTGA
CCCTGGTCACCAGCACCAATCTCCTCTGGGCGCTTGGTAAAGTGACCATGGACACCCTGGGCAATATCTGGGCTCTGCTGCTCAATGTTGACTAGGACCT
TGCAGTTATCAGCATCAAGACCGACATCATCAGAAACAAACCCAATGCTGCGGCATGTGTCACGGACAATCTTCTCGTAGTCAACAGTGGCCTTGGTGGT
GATCTCTCCGAACACCATTACCATGTTTGTTTTGGTACATGTCTCACAGGCAACCTTGCTGTCAGGATCCTGCTCAAGGCAAGCATCAAGCACTGCGTCA
GAGATCTGGTCGCACAGCTTGTCGGGGTGTCC