Detailed information on CNT30222508


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522989Hordeum vulgareSetaria italica90.9429.1790.77271forward
CNT30641234Hordeum vulgareNymphaea colorata66.4433.2287.88198forward
CNT30282161Hordeum vulgareChenopodium quinoa76.8540.9781.22229forward
CNT30135152Hordeum vulgareLolium perenne61.7428.491.3184forward
CNT3015043Hordeum vulgareZea mays54.0332.8688.2161forward
CNT3054999Hordeum vulgareAmborella trichopoda24.8312.5686.4974forward
CNT30113854Hordeum vulgareFicus carica79.8733.5783.19238forward

Expression of CNT30222508

Peptides detected in this lncRNA

>peptide 1 (98 aa)
LHLTRNAFLAFSSFSALPDQALRVLCWRARPKEKERFQGFLVWSLFMAFRFRVASSSLCPPERKTMAGTAAGTVLWRVRTVYSAMTSGVTFLASEPGVT

>peptide 2 (97 aa)
APHQERLPGLLLVLRLARPGLEGALLEGTSEGEGKVPGLLGLELVHGIQVQSRLLLALSTGEEDDGGDGSRDGPLEGADGVLSNDLRGHLLGIRTRGD

Sequence

>CNT30222508
TTGCACCTCACCAGGAACGCCTTCCTGGCCTTCTCCTCGTTCTCCGCCTTGCCAGACCAGGCCTTGAGGGTGCTCTGCTGGAGGGCACGTCCGAAGGAGA
AGGAAAGGTTCCAGGGCTTCTTGGTCTGGAGCTTGTTCATGGCATTCAGGTTCAGAGTCGCCTCCTCCTCGCTCTGTCCACCGGAGAGGAAGACGATGGC
GGGGACGGCAGCAGGGACGGTCCTCTGGAGGGTGCGGACGGTGTACTCAGCAATGACCTCAGGGGTCACCTTCTTGGCATCAGAACCAGGGGTGACCA