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Detailed information on CNT30374848


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LF98|ALFC8_ARATH, E-value = 2e-20

BLAST vs NONCODE:
NONATHT002453, E-value = 6e-169

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30282161Arabidopsis thalianaChenopodium quinoa24.2719.3281.48108forward
CNT30355687Arabidopsis thalianaLactuca sativa24.2716.3181.48108forward

Expression of CNT30374848

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTFLFGRVFKILNSKKQNPIKIKTQIQKENEEKTLIIR*

>peptide 2 (41 aa)
FMCLKDEISYTNQRTKYNNLGSRSGKSTETDFQIPQEVQQK*

Sequence

>CNT30374848
TTTTTATGTGTTTAAAAGACGAGATTTCATATACGAATCAGAGAACCAAATACAATAATTTAGGCTCAAGAAGCGGTAAATCAACAGAAACTGATTTTCA
AATTCCACAAGAGGTTCAACAGAAATAACCTCAAATGACTTTTTTATTTGGGCGTGTTTTTAAAATACTCAATTCTAAAAAACAAAACCCAATCAAAATC
AAAACACAAATCCAAAAGGAAAATGAAGAAAAAACACTTATAATCCGATAATGTCAAGTAGAAAAACGAAAAATCCCTAGAAATATATCCAGGAAGATGA
CAAACGTCACAATTCTCCTCTTTACCTGCCCATGTCTTCAAGGTAGACTGCTGCAACGCACGTCCGAATGAGAAAGACAATGACCATGGCTTCTTGGTCT
TCAACTGGTTCATGGCGTTCAAGTTCCTGGTGTGCCGATGTAGGC