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Detailed information on CNT30364112


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Sorghum bicolorOryza sativa27.9527.4689.43246forward
CNT30670509Sorghum bicolorSetaria viridis17.394595.42153forward
CNT30522989Sorghum bicolorSetaria italica27.3925.9493.36241forward
CNT30641283Sorghum bicolorNymphaea colorata31.9314.3483.27281forward
CNT30282161Sorghum bicolorChenopodium quinoa14.5522.985.94128forward
CNT3021292Sorghum bicolorCitrullus lanatus16.0220.9881.56141forward
CNT30729011Sorghum bicolorCorchorus capsularis15.6820.5783.33138forward
CNT30636619Sorghum bicolorCapsicum annuum27.531.0782.64242forward
CNT30222288Sorghum bicolorHordeum vulgare18.8639.2491.57166forward
CNT30552330Sorghum bicolorOryza glaberrima33.7540.9789.56297forward
CNT30437900Sorghum bicolorAegilops tauschii27.0554.3489.5238forward
CNT30457732Sorghum bicolorSaccharum spontaneum35.4523.4297.44312forward
CNT30135152Sorghum bicolorLolium perenne26.9336.5788.61237forward
CNT3014358Sorghum bicolorZea mays48.4174.0993.9426forward
CNT3066783Sorghum bicolorLeersia perrieri24.4365.9589.3215forward
CNT30650515Sorghum bicolorRosa chinensis28.4131.8182250forward
CNT30717283Sorghum bicolorMalus domestica golden23.330.680.49205forward
CNT30625244Sorghum bicolorDaucus carota26.3635.2679.31232forward
CNT30683148Sorghum bicolorTriticum urartu21.9335.8192.75193forward
CNT30720854Sorghum bicolorTriticum spelta21.728.1390.05191forward
CNT30479170Sorghum bicolorArabidopsis halleri15.3431.9182.22135forward
CNT30120586Sorghum bicolorCitrus clementina10.1126.6588.7689forward
CNT3036222Sorghum bicolorCucumis melo9.0921.8683.7580forward
CNT30149431Sorghum bicolorBrachypodium distachyon14.4326.3592.91127forward
CNT3099714Sorghum bicolorOryza rufipogon20.6820.5288.46182forward
CNT30579988Sorghum bicolorEchinochloa crusgalli28.6478.594.05252forward

Expression of CNT30364112

Peptides detected in this lncRNA

>peptide 1 (32 aa)
VDRTKKRGCSMLHRQDHITRNLTPKRLVNIRI*

>peptide 2 (51 aa)
MYWRAPGQQKRSSRRARRFSSTFSTLMLERRLPMVPVDSSAARIPLPGVPM*

>peptide 3 (57 aa)
MVLVESLVAGSKDDLSDISAAINVMRAINKDLRLNNRHQTVLLADDGIASQGGRLPP*

Sequence

>CNT30364112
GTAGATAGAACAAAAAAAAGAGGCTGCTCGATGCTCCATCGGCAGGACCATATTACACGAAATTTAACACCAAAGAGACTAGTTAATATACGAATATAAA
GATAACCATCATCCACATAGGAAGCATGTTTTTTTTTGTTGTCCGAATATAAGCTCAAACGAGCAAACCACACTCAGCAACCTACTCGTAGGCAGGAGTT
CCAAAACGGGCACGCAAAGAGAAGCAACTCAGTACTTGTAGTCCTTGACGTGGAGGCTCTCGGTGTCAGCAGCAGCATCACCCTTGTAGGTGCCGAGGGT
AGCCTCAGAGTTGGCCTTGCACCTGGCGAGGAAGACAACAGCAGGCACAGCAGCAGGGACGGTCCTCTGGAGGGTGCGGACGGTGTACTCAGCAATCAAC
TCAGGGGTCACCTTCTTAGAGTCAGAGCCTGGGGTCACCATGTTGGGCTTCAGGAGGGTACCCTCCAGGAGGACATGGTGCTCGTTGAGAGCCTTGTAGC
AGGCAGCAAGGACGACCTCAGTGACATAAGCGCAGCGATCAATGTCATGAGGGCCATCAACAAGGATCTCAGGCTCAACAATCGGCACCAGACCGTTCTC
CTGGCAGATGATGGCATAGCGAGCCAGGGAGGACGCCTCCCTCCTTGAGGACATCGACAAAAGGCTTGCCATCCTTGGTCTTCTGGTAGAGGGTCTCCTC
GAAGAGGATCACACCGCTGATGTACTGGAGGGCACCAGGGCAGCAGAAAAGGAGCTCACGGAGGGCACGGCGGTTCTCCTCCACGTTCTCGACATTGATG
CTGGAAAGACGCTTGCCAATGGTGCCAGTGGACTCATCAGCAGCAAGGATACCCTTGCCAGGGGTGCCAATGTAGGCAGC