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Detailed information on CNT30227805


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LAA6|PIP15_ARATH, E-value = 2e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670956Ananas comosusSetaria viridis41.617.7682.83198forward
CNT30523825Ananas comosusSetaria italica46.0169.380.82219forward
CNT30640424Ananas comosusNymphaea colorata40.7623.3582.47194forward
CNT30316259Ananas comosusCorylus avellana20.831.0387.8899forward
CNT30549105Ananas comosusIpomoea triloba20.817.483.8499forward
CNT30515171Ananas comosusJuglans regia38.4519.3982.51183forward
CNT3020673Ananas comosusCitrullus lanatus41.3918.5381.73197forward
CNT30631135Ananas comosusVigna unguiculata38.2415.580.77182forward
CNT30221132Ananas comosusHordeum vulgare27.3156.2884.62130forward
CNT30385796Ananas comosusTriticum turgidum32.9838.281.53157forward
CNT30560769Ananas comosusActinidia chinensis21.6415.3793.2103forward
CNT30590202Ananas comosusMusa acuminata40.9721.5784.62195forward
CNT30234760Ananas comosusBrassica oleracea21.4333.4482.35102forward
CNT30437220Ananas comosusAegilops tauschii40.9734.0981.03195forward
CNT30658043Ananas comosusTriticum dicoccoides32.9857.382.17157forward
CNT30261241Ananas comosusBrassica rapa17.4422.886.7583forward
CNT30465879Ananas comosusSaccharum spontaneum40.7620.3181.44194forward
CNT30131630Ananas comosusLolium perenne32.7758.2183.97156forward
CNT30680472Ananas comosusTriticum urartu40.9727.9882.05195forward
CNT30340874Ananas comosusEragrostis tef13.0322.9688.7162reverse complement
CNT30364641Ananas comosusSorghum bicolor41.3925.4581.73197forward
CNT30573330Ananas comosusVitis vinifera14.2922.388.2468forward
CNT30706529Ananas comosusPrunus avium41.8112.9482.41199forward
CNT3024898Ananas comosusPopulus trichocarpa23.1121.2483.64110forward
CNT3038976Ananas comosusCucumis melo38.2426.6583.52182forward
CNT30495761Ananas comosusDigitaria exilis32.9840.0585.99157forward
CNT30116468Ananas comosusOryza nivara40.9727.4685.13195forward
CNT30112244Ananas comosusFicus carica38.8728.0383.24185forward
CNT3050609Ananas comosusCucumis sativus38.2418.4882.42182forward

Expression of CNT30227805

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGCLSENLFAPKLTSSSFPSILFPLSLSLFLSLSSCQREEEEEAE*

>peptide 2 (45 aa)
MMAAPRLLAGLMPVPVMGMVARWTRKTAKPMGREDSVDEDKGKWP*

>peptide 3 (54 aa)
VDDGSSKAPSRVDASASDGDGGQVDQEDSKANGQRRQCRRGQRKVAMNSAIPAL*

Sequence

>CNT30227805
GTAGATGATGGCAGCTCCAAGGCTCCTAGCAGGGTTGATGCCAGTGCCAGTGATGGGGATGGTGGCCAGGTGGACCAGGAAGACAGCAAAGCCAATGGGC
AGAGAAGACAGTGTAGACGAGGACAAAGGAAAGTGGCCATGAACTCGGCTATCCCTGCCCTGTAGAAGGACCATGATTTGAGCTCCCCTGGCTCGAACAG
AGGAGCCGCGGGTGGCTCCTTGTAGTCCTTGCTATCTTGGCTCTGCGCAGCAGTCCCTATGGGCTGCCTCTCCGAGAACTTGTTCGCCCCCAAGCTCACA
TCCTCCTCCTTCCCCTCCATCCTATTCCCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTAGTTGTCAAAGGGAGGAGGAGGAGGAAGCAGAGTGATGAA
GAAGATACCCTGCAGGGGAAGGAAAAGCCTAGTAATGGTGGGGTTTTATAGAGAGAGAGACAGAGACTCAGAGAGG