Detailed information on CNT30560769


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08733|PIP13_ARATH, E-value = 8e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523825Actinidia chinensisSetaria italica15.0731.9687.13101forward
CNT30515171Actinidia chinensisJuglans regia20.614.6283.33138forward
CNT30728342Actinidia chinensisCorchorus capsularis47.9148.6486.29321forward
CNT30709876Actinidia chinensisGlycine max29.8556.0284.5200forward
CNT3095762Actinidia chinensisSolanum tuberosum24.639.1683.64165forward
CNT30590285Actinidia chinensisMusa acuminata45.0728.3380.46302forward
CNT3061285Actinidia chinensisArabidopsis lyrata22.2420.583.22149forward
CNT30227805Actinidia chinensisAnanas comosus15.3721.6493.2103forward
CNT3024898Actinidia chinensisPopulus trichocarpa20.927.0385.71140forward
CNT30319296Actinidia chinensisAsparagus officinalis37.3156.4382.4250forward
CNT30118191Actinidia chinensisCitrus clementina23.4315.1183.44157forward

Expression of CNT30560769

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MVFVEDDGGPETSGGINAGSGDGDGANNLSSKAITLGVAMCHNIGPTTQHLVWGRLEPLDHTSTTDGSKALHHYIEDCPG*

>peptide 2 (32 aa)
MMAAPRLRAGLMPVPVMGMVPIISAPRPSPLV*

Sequence

>CNT30560769
ATTGGCTAATATTTATTAGAATATCGGTATTGGAAGGCCAAAATCCCGATACCTAGCGGCCACGTGTCGACCAATATTTAAAAGCTTGATTAGCACTCCA
TCTATCATCAAGGAACATTAACATTGGCATCAAAAAAAATCTGTTGTGAAAAGACTCACTTGGTCATCCCATGCATGGTCTTTGTTGAAGATGATGGCGG
CCCCGAGACTTCGGGCGGGATTAATGCCGGTTCCGGTGATGGGGATGGTGCCAATAATCTCAGCTCCAAGGCCATCACCCTTGGTGTAGCCATGTGCCAC
AACATTGGCCCCACCACCCAACATCTGGTATGGGGTAGGCTGGAACCCCTTGACCACACCAGCACCACAGATGGCTCCAAGGCACTGCATCACTATATAG
AAGATTGCCCTGGTTAGGGACAGCTTCCTTGCCAGAAACAAACCAAAGGCCCAAGCAATCCCCTGAATACCCACAGTGGCACACTTGCTAGGTGACCTGG
AAACACCCATTACAGTCAAAATGGTGATGTACAAGAATAAGAAAGTGGCCACGAACTCGGCAATCCCAGCCCTGTAGAAGGACCATGACTTGAGCTCCCC
TGGCTCGAACAGGGGAGCTGGGGGTGGCTCCTTGTAGTCCTTGTCTGTCTGAGCCGATGTGCCCAATGGC