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Detailed information on CNT3024898


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 9e-75

BLAST vs NONCODE:
NONMTRT001381, E-value = 4e-13

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316259Populus trichocarpaCorylus avellana27.0343.8985140forward
CNT30515171Populus trichocarpaJuglans regia42.6623.4181.45221forward
CNT3020673Populus trichocarpaCitrullus lanatus41.5120.2381.86215forward
CNT30728378Populus trichocarpaCorchorus capsularis53.2821.9682.25276forward
CNT3095762Populus trichocarpaSolanum tuberosum27.037.7783.57140forward
CNT30560769Populus trichocarpaActinidia chinensis27.0320.985.71140forward
CNT3085870Populus trichocarpaVigna radiata17.5720.7385.7191forward
CNT30227805Populus trichocarpaAnanas comosus21.2423.1183.64110forward
CNT30211930Populus trichocarpaHelianthus annuus22.5935.3583.76117forward
CNT30706529Populus trichocarpaPrunus avium35.7112.0383.24185forward
CNT30325169Populus trichocarpaAsparagus officinalis10.8121.1389.2956forward
CNT3038712Populus trichocarpaCucumis melo32.245783.83167forward
CNT3050391Populus trichocarpaCucumis sativus32.2426.2682.63167forward

Expression of CNT3024898

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTMKSVRLAQTVVPGVAPCSPCHLGFELPCQVAASR*

Sequence

>CNT3024898
AGGACTAACCATATTGGCACCACCATTTAACAACTCGTAGTTTTTTTTCCCATAAAATCCTTTCACTACACCAGCACCGCATATGGCACCCAGGCACTGC
ATCAGCATGTAGAACACGGCCCTTGTCAAGGACAATTTCCTTGCCAAAAATAGCCCAAAAGTCACAGCAGGATTTATGTGACCCCCTGCAAGTACCAAAA
TCACATCGCAGTGCAGTAAACAAGAGCGAAAATCATGCCACCAAAGGCCCAAGCGATCCCTTGAATTCCAACCGTTGTGCACTTAGTCGTGTCCTTAAAC
ACGCCCATCACAGTCAAAACGGTGATGTACAAAAACAAGAAGGTGGCCATGAACTCTGCAATACCAGCCCTGTAAAATGACCATGAAGTCAGTTCGCTTG
GCTCAAACAGTGGTGCCGGGGGTGGCTCCTTGTAGTCCTTGTCATCTTGGCTTTGAGCTGCCGTGCCAAGTGGCTGCCTCTCGTTGAATTTGTTAGCTCC
CAATCTAACATCTTCTTC