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Detailed information on CNT30640424


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691396Nymphaea colorataOryza sativa39.1143.7480325forward
CNT30670956Nymphaea colorataSetaria viridis41.7631.1283.57347forward
CNT30519732Nymphaea colorataSetaria italica23.2367.2583.94193forward
CNT30316259Nymphaea colorataCorylus avellana15.1639.582.54126forward
CNT30549105Nymphaea colorataIpomoea triloba16.8524.681.43140forward
CNT3019525Nymphaea colorataCitrullus lanatus8.4231.969070forward
CNT30298239Nymphaea colorataTriticum aestivum18.7723.1183.97156forward
CNT30221132Nymphaea colorataHordeum vulgare14.4451.9587.5120forward
CNT30564991Nymphaea colorataActinidia chinensis21.1843.5686.36176forward
CNT30590722Nymphaea colorataMusa acuminata21.941.3687.91182forward
CNT30234760Nymphaea colorataBrassica oleracea14.0838.3682.05117forward
CNT30553402Nymphaea colorataOryza glaberrima14.5623.1481.82121forward
CNT30145515Nymphaea colorataMedicago truncatula6.522.0490.7454forward
CNT30437220Nymphaea colorataAegilops tauschii20.9430.4287.36174forward
CNT30463151Nymphaea colorataSaccharum spontaneum23.3538.5785.05194forward
CNT30227805Nymphaea colorataAnanas comosus19.0133.1983.54158forward
CNT30646773Nymphaea colorataRosa chinensis14.6833.0683.61122forward
CNT30680472Nymphaea colorataTriticum urartu24.0728.6986.5200forward
CNT30366377Nymphaea colorataSorghum bicolor33.8156.5484.7281forward
CNT30595794Nymphaea colorataOryza meridionalis13.8452.5187.83115forward
CNT30370054Nymphaea colorataOryza glumipatula14.5623.1481.82121forward
CNT30109688Nymphaea colorataOryza longistaminata14.5622.8381.82121forward
CNT30325169Nymphaea colorataAsparagus officinalis16.9753.2184.4141forward
CNT30575194Nymphaea colorataOryza barthii13.8456.187.83115forward
CNT30116468Nymphaea colorataOryza nivara23.7127.7588.32197forward
CNT3050369Nymphaea colorataCucumis sativus15.2828.1684.25127forward

Expression of CNT30640424

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKLKISHHNSMSGHKGRDSKKNSIFLGYAKGCFQKKI*

>peptide 2 (40 aa)
MTGARRARTAAPAAVPCSPCPGSAPPFRSAASQRICWHRV*

>peptide 3 (32 aa)
MRLEISHHRPKKTLTLKDTKKGEGRQYRRNLP*

>peptide 4 (78 aa)
MAYRDMGIPSVSLGIGGGEDSVDEDEDHTTEGPSDALDADGGTQTSVGPFHPHNGEDGDVEEEEGGHELRYPRPPEGP*

Sequence

>CNT30640424
GCAGAACATTCTAATTAGACAGAATCTACCAAAGAAAACTTTCACATGAAAAACCAAAAAGGGACTTGAGAATATGGAGGGAACAGAACAGTAGAAAGAA
TTTCAAAGCTCCCATGAGGTTAGAAATTTCTCATCATCGACCAAAGAAAACCTTAACTTTAAAAGACACCAAAAAAGGAGAAGGTAGACAGTACAGAAGA
AATCTCCCATGAAGCTAAAAATTTCTCATCACAACTCTATGTCAGGCCATAAAGGAAGAGATTCAAAGAAGAATAGTATATTTCTTGGCTATGCTAAAGG
TTGTTTTCAAAAGAAAATCTGAAGCGACAAAGAAACCCTGGCATTAAACAGCATTATTTTTTACATTTAAGAGAGAAAGAGAGAAAGATGGCTTACAGGG
ACATGGGAATCCCTAGCGTTTCTCTTGGCATCGGTGGCGGAGAAGACAGTGTAGACGAGGACGAAGATCATACCACCGAAGGCCCAAGCGATGCCCTGGA
TGCCGACGGTGGTACACAGACCAGTGTTGGACCTTTTCACCCCCATAACGGTGAGGATGGTGATGTAGAGGAAGAGGAAGGTGGCCATGAACTCCGCTAT
CCCCGCCCTCCAGAAGGACCATGACTGGAGCTCGCCGGGCTCGAACAGCGGCGCCGGCGGCGGTTCCTTGTAGTCCTTGTCCTGGCTCTGCGCCGCCGTT
CCGATCGGCTGCCTCTCAGAGAATTTGTTGGCACCGAGTCTAACATCTTCTTCCTTCCCCTCCATGATCCTGTTCCTCACAAGCCTCTCTTCCTTTCTTT
CTCTCCTCTCTGGTTCTTCTCACTGTCCTGC