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Detailed information on CNT3020673


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DO53|PIP12_MUSAC, E-value = 6e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Citrullus lanatusOryza sativa16.1822.6680.81172forward
CNT30670956Citrullus lanatusSetaria viridis21.6420.6383.04230forward
CNT30524031Citrullus lanatusSetaria italica7.8130.1890.3683forward
CNT30316259Citrullus lanatusCorylus avellana12.9843.2684.06138forward
CNT30546615Citrullus lanatusIpomoea triloba11.5745.7286.18123forward
CNT30515171Citrullus lanatusJuglans regia1921.480.69202forward
CNT30375565Citrullus lanatusArabidopsis thaliana5.9325.5192.0663forward
CNT30728378Citrullus lanatusCorchorus capsularis21.6418.380.43230forward
CNT30631130Citrullus lanatusVigna unguiculata21.7318.4481.82231forward
CNT30709876Citrullus lanatusGlycine max8.1824.3783.9187forward
CNT3046104Citrullus lanatusPrunus dulcis9.0321.7282.2996forward
CNT30163276Citrullus lanatusPistacia vera11.7640.5888.8125forward
CNT30636643Citrullus lanatusCapsicum annuum9.7822.0383.65104forward
CNT3095762Citrullus lanatusSolanum tuberosum23.1413.6579.67246forward
CNT30287172Citrullus lanatusTriticum aestivum12.0450.7988.28128forward
CNT30224613Citrullus lanatusHordeum vulgare10.0739.4885.98107forward
CNT30564991Citrullus lanatusActinidia chinensis13.7336.1483.56146forward
CNT30590722Citrullus lanatusMusa acuminata10.352583.64110forward
CNT3085716Citrullus lanatusVigna radiata20.1369.4880.84214forward
CNT30542732Citrullus lanatusBrassica napus12.9820.5484.78138forward
CNT30234760Citrullus lanatusBrassica oleracea12.744.2682.96135forward
CNT30552571Citrullus lanatusOryza glaberrima6.1125.6986.1565forward
CNT30145769Citrullus lanatusMedicago truncatula7.8122.887.9583forward
CNT30658930Citrullus lanatusTriticum dicoccoides11.3850.6389.26121forward
CNT30612661Citrullus lanatusArabis alpina6.9625.6185.1474forward
CNT30461535Citrullus lanatusSaccharum spontaneum12.6126.6985.07134forward
CNT30131630Citrullus lanatusLolium perenne14.8658.9684.18158forward
CNT30227805Citrullus lanatusAnanas comosus18.5341.3981.73197forward
CNT30646773Citrullus lanatusRosa chinensis12.1434.9681.4129forward
CNT30712987Citrullus lanatusMalus domestica golden10.6331.6584.07113forward
CNT30364641Citrullus lanatusSorghum bicolor21.6429.7282.17230forward
CNT30595794Citrullus lanatusOryza meridionalis10.9152.9781.9116forward
CNT3024898Citrullus lanatusPopulus trichocarpa20.2341.5181.86215forward
CNT30325169Citrullus lanatusAsparagus officinalis13.6454.7283.45145forward
CNT30101140Citrullus lanatusOryza rufipogon5.2721.3787.556forward
CNT30495761Citrullus lanatusDigitaria exilis12.6134.1885.07134forward
CNT30116468Citrullus lanatusOryza nivara22.0132.9684.19234forward
CNT30112244Citrullus lanatusFicus carica17.1227.5882.97182forward
CNT30334008Citrullus lanatusCynara cardunculus6.430.2286.7668reverse complement

Expression of CNT3020673

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MNVPTISAPSPSPLVYPLFTTLAPPPSLS*

>peptide 2 (32 aa)
MGCLSLNLLAPSRTSSSFPSMITSCFRTLFLLQ

Sequence

>CNT3020673
CGGAACATGTGAGTCTCTGGCACTACGTTTGGCGTCAGTGGCGGAGAAGACGGTGTAAACAAGGATGAATGTGCCGACGATCTCAGCGCCGAGCCCATCT
CCTTTGGTGTATCCACTGTTCACAACGTTAGCTCCACCACCGAGCCTGTCGTAGGGCTTGGGTTGGAACCCCTTCACCACGCCGGCGCCGCAGATGGCAC
CAAGGCACTGCATCACTATGTAGAAAATCGCCCTGGTCAACGACAACTTTCTCGCCAAAAACAGCCCGAAAGTCACCGCCGGGTTAATGTGTCCACCGGA
AATTCCAGCAGTACAGTAAACCAGAGCGAAAATCATACCGCCGAAAGCCCAAGCAATCCCCTGAATCCCGACGGTCTTACAGGTGTTGCCGTTGGCTTCG
TTGGACCGGACGACCCCCATGACGGTCAAAACGGTGATGTAAAGGAAGAGGAAAGTGGCGAAAAACTCTGCGATTCCAGCTCTGTAAAAGGACCATGAAG
TGAGCTCGTCTGGCTCGAACAGAGGCGCCGGTGGTGGCTCCTTGTAGTCCTTGGCGTCGTCCTGGCTCTGCGCCGCCCACCAAGGCACTGCATCACTATG
TAGAAAATCGCCCTGGTCAACGACAGCTTTCTCGCCAGAAACAGCCCAAAAGTCACTGCCGGGTTAATGTGGCCACCGGAGATTCCAGCAGTACAGTAAA
CCAGAGCAAAAATCATACCCCCGAAAGCCCAAGCAATCCCCTGAATCCCGACGGTCTTACAGGTGTTGCCGTTGGCTTCGTTGGACCGGACGACCCCCAT
GACGGTCAAAACGGTGATGTAAAGGAAGAGGAAAGTGGCGAAAAACTCTGCGATTCCAGCTCTGTAAAAGGACCATGAAGTGAGCTCGTCTGGCTCGAAC
AGAGGCGCCGGTGGTGGCTCCTTGTAGTCCTTGGCGTCGTCCTGGCTCTGCGCCGCCGTCCCAATGGGCTGCCTCTCGTTGAACTTGTTGGCTCCCAGTC
GGACATCTTCCTCCTTCCCCTCCATGATTACTTCTTGTTTTAGAACTCTGTTTCTTCTGCAAT