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Detailed information on CNT30131630


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671344Lolium perenneSetaria viridis59.3326.9991.19159forward
CNT30523825Lolium perenneSetaria italica58.2149.3792.31156forward
CNT3020673Lolium perenneCitrullus lanatus58.9614.8684.18158forward
CNT30385796Lolium perenneTriticum turgidum72.3947.294.85194forward
CNT30437220Lolium perenneAegilops tauschii58.2127.2792.95156forward
CNT30658043Lolium perenneTriticum dicoccoides72.3970.894.33194forward
CNT30461535Lolium perenneSaccharum spontaneum73.8839.4491.41198forward
CNT30227805Lolium perenneAnanas comosus58.2132.7783.97156forward
CNT30712987Lolium perenneMalus domestica golden27.9921.0186.6775forward
CNT30680472Lolium perenneTriticum urartu58.2122.3894.23156forward
CNT30340874Lolium perenneEragrostis tef23.8823.790.6264reverse complement
CNT3038976Lolium perenneCucumis melo29.111.4287.1878forward
CNT30495761Lolium perenneDigitaria exilis72.3949.4994.33194forward
CNT30112244Lolium perenneFicus carica53.7321.8281.94144forward

Expression of CNT30131630

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGCLSENLFAPRRTSSSLPSIATRAAGVWLLASSSCA*

>peptide 2 (75 aa)
GGAVDEREDHAAEGPGLELAGLEQRRRRGLLVVLVLGALRRRADGLPLGELVRPQADILLLALHCYTSRRCVATG*

Sequence

>CNT30131630
CCGGCGGTGCAGTAGACGAGCGCGAAGATCATGCCGCCGAAGGACCAGGACTTGAGCTCGCCGGGCTCGAACAGCGGCGCCGGAGGGGGCTCCTTGTAGT
CCTTGTCCTCGGAGCCCTGCGCCGCCGTGCCGATGGGCTGCCTCTCGGAGAACTTGTTCGCCCCCAGGCGGACATCCTCCTCCTTGCCCTCCATTGCTAC
ACGAGCCGCAGGTGTGTGGCTACTGGCTAGCTCCTCGTGCGCCTGAGCTGAAACAGATGGCTTTTGTG