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Detailed information on CNT30437220


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 3e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670956Aegilops tauschiiSetaria viridis40.3820.7290.48231forward
CNT30523825Aegilops tauschiiSetaria italica33.5760.7692.19192forward
CNT30640424Aegilops tauschiiNymphaea colorata30.4220.9487.36174forward
CNT30316259Aegilops tauschiiCorylus avellana24.4843.8980140forward
CNT30549105Aegilops tauschiiIpomoea triloba22.0322.1480.95126forward
CNT30290687Aegilops tauschiiTriticum aestivum46.6835.8999.63267forward
CNT30221132Aegilops tauschiiHordeum vulgare23.7858.8798.53136forward
CNT30385796Aegilops tauschiiTriticum turgidum38.9954.2695.52223forward
CNT30564991Aegilops tauschiiActinidia chinensis24.4834.6590140forward
CNT30590722Aegilops tauschiiMusa acuminata24.4831.8285140forward
CNT30658043Aegilops tauschiiTriticum dicoccoides38.9981.3995.07223forward
CNT30463151Aegilops tauschiiSaccharum spontaneum39.6945.1391.19227forward
CNT30131630Aegilops tauschiiLolium perenne27.2758.2192.95156forward
CNT30227805Aegilops tauschiiAnanas comosus34.0940.9781.03195forward
CNT30680472Aegilops tauschiiTriticum urartu53.6744.0596.42307forward
CNT30340874Aegilops tauschiiEragrostis tef11.0123.3390.4863reverse complement
CNT30366304Aegilops tauschiiSorghum bicolor39.6945.7792.07227forward
CNT30595794Aegilops tauschiiOryza meridionalis19.7651.690.27113forward
CNT30706529Aegilops tauschiiPrunus avium21.5885.37123forward
CNT30325169Aegilops tauschiiAsparagus officinalis24.6553.2184.4141forward
CNT30495761Aegilops tauschiiDigitaria exilis27.4540.0591.08157forward
CNT30116468Aegilops tauschiiOryza nivara40.0332.2590.39229forward
CNT30603734Aegilops tauschiiOryza punctata34.441583.25197forward
CNT3050369Aegilops tauschiiCucumis sativus24.6531.2684.4141forward

Expression of CNT30437220

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLSSSEQRKGGVLGFSFGFSSLTWSDQACSLL*

Sequence

>CNT30437220
GTGCAATAGAGAGTAGCTATGCGTCGGCATCAGCTTTAAGTTACTGAATACTACTGCCACCACATGCCTGCAGTTACTACTGCTGCAGAAAACAAGCAAG
TGCCATGCTTTCAAGTTCAGAACAAAGGAAAGGAGGGGTGTTAGGTTTCAGTTTCGGTTTTAGTTCACTCACGTGGTCTGACCAGGCGTGCTCCCTGTTG
TAGATGATGGCCGCGCCGAGGCCGGAGCCCTTGGTGTAGCCGGGCGCCACCACGTTGGCGGCGCCGCTGTACCCCATCACGGTGAGGATGGTGACGTAGA
GGAAGAGGAAGGTGGCCATGAACTCGGCGATGCCGGCGCGGTAGAAGGACCAGGACTTGAGCTCGCCGGGCTCGAAAAGCGGCGCCGGCGGGGGCTCCTT
GTAGTCCTTGTCCTCGGACCCCTGCGCCGCCGTGCCGATGGGCTGACGCTCCGAGTACTTGTTCGCCCCGAGCCGCACGTCCTCCTCCTTGCCCTCCATC
GCTGCTGCCCACTGCCCTCGCCGGAAGGTGGTCGCTGCTCGCCTGAGCTGGAACGGAGCAAGATGGCTTCTG