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Detailed information on CNT30549105


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08451|PIP1_SOLLC, E-value = 1e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670956Ipomoea trilobaSetaria viridis22.1411.382.54126forward
CNT30640424Ipomoea trilobaNymphaea colorata24.616.8581.43140forward
CNT30316259Ipomoea trilobaCorylus avellana51.1491.2286.6291forward
CNT30515171Ipomoea trilobaJuglans regia24.2514.6281.88138forward
CNT30728342Ipomoea trilobaCorchorus capsularis38.1432.8888.02217forward
CNT30502187Ipomoea trilobaNicotiana attenuata52.98.2881.4301forward
CNT30163276Ipomoea trilobaPistacia vera15.6428.987.6489forward
CNT3095762Ipomoea trilobaSolanum tuberosum4213.2683.26239forward
CNT30224613Ipomoea trilobaHordeum vulgare10.1921.493.158forward
CNT30560771Ipomoea trilobaActinidia chinensis37.7928.2586.51215forward
CNT30145769Ipomoea trilobaMedicago truncatula32.5150.8281.62185forward
CNT30437220Ipomoea trilobaAegilops tauschii22.1422.0380.95126forward
CNT30463151Ipomoea trilobaSaccharum spontaneum22.1425.0580.95126forward
CNT30227805Ipomoea trilobaAnanas comosus17.420.883.8499forward
CNT30646773Ipomoea trilobaRosa chinensis24.9638.4888.03142forward
CNT30211930Ipomoea trilobaHelianthus annuus32.1655.2984.7183forward
CNT30623024Ipomoea trilobaDaucus carota12.4821.3288.7371forward
CNT30680472Ipomoea trilobaTriticum urartu22.1418.0881.75126forward
CNT30364641Ipomoea trilobaSorghum bicolor22.1416.2882.54126forward
CNT30595794Ipomoea trilobaOryza meridionalis16.1742.0182.6192forward
CNT30573330Ipomoea trilobaVitis vinifera17.0531.882.4797forward
CNT30706529Ipomoea trilobaPrunus avium26.549.8283.44151forward
CNT3024497Ipomoea trilobaPopulus trichocarpa38.4977.9481.28219forward
CNT30325169Ipomoea trilobaAsparagus officinalis25.3154.3484.72144forward
CNT3038888Ipomoea trilobaCucumis melo24.7813.6285.82141forward
CNT30116468Ipomoea trilobaOryza nivara21.6217.3282.93123forward
CNT30334008Ipomoea trilobaCynara cardunculus9.3123.5688.6853reverse complement
CNT3050391Ipomoea trilobaCucumis sativus24.7822.1784.4141forward

Expression of CNT30549105

Peptides detected in this lncRNA

>peptide 1 (97 aa)
VDKDEGANNLSTKAISLGVTWGYRVGTTIVEHVFSLHESLHHPSTTDGSKALHHHVEQSPSQGKFPGQEQPKGQRSCHQKPKQYPEYPQTCRSHQTS*

Sequence

>CNT30549105
GTAGACAAGGATGAAGGTGCCAACAATCTCAGCACCAAGGCCATCTCCCTTGGTGTAACCTGGGGCTACCGAGTTGGTACCACCATTGTGGAGCATGTAT
TCAGTCTTCATGAATCCCTTCACCACCCCAGCACCACAGATGGCTCCAAGGCACTGCATCACCATGTAGAACAGAGCCCTAGTCAAGGAAAGTTTCCTGG
CCAAGAACAACCCAAAGGGCAAAGATCATGCCACCAAAAGCCCAAGCAATACCCTGAATACCCACAGACTTGCAGATCCCATCAGACCTCTTGACACCCA
TAACAGTCAAGATGGTGATGTAGAGGAACAAGAAGGTGGCCACAAACTCAGCAATCCCAGCTCTGTAGAAGGACCATGAGGTGAGCTCACCAGGCTCAAA
CAAGGGTGCTGGGGGTGGCTCCTTGTAGTCCTTGTCTGTCTGAGCTGCTGTGCCCAGTGGTTGGGTCTCCCTGAACTTGTTGGCTCCAAGCTTAACATCC
TCTTCCTTGCTCTCTGCCATTTTTTTTTTCTTGAGCTCTCTTTCTCTCTCTCAACACTATGAAAAAAAG