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Detailed information on CNT30385796


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 2e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671344Triticum turgidumSetaria viridis38.9327.1690.62160forward
CNT30523825Triticum turgidumSetaria italica37.9649.3792.31156forward
CNT30640394Triticum turgidumNymphaea colorata31.3925.886.82129forward
CNT30221132Triticum turgidumHordeum vulgare24.3343.2999100forward
CNT30437220Triticum turgidumAegilops tauschii54.2638.9995.52223forward
CNT30658043Triticum turgidumTriticum dicoccoides65.9498.9199.63271forward
CNT30461535Triticum turgidumSaccharum spontaneum50.1241.0491.75206forward
CNT30131630Triticum turgidumLolium perenne47.272.3994.85194forward
CNT30227805Triticum turgidumAnanas comosus38.232.9881.53157forward
CNT30712987Triticum turgidumMalus domestica golden1820.7385.1474forward
CNT30680472Triticum turgidumTriticum urartu54.9932.42100226forward
CNT30340874Triticum turgidumEragrostis tef15.3323.3392.0663reverse complement
CNT30495761Triticum turgidumDigitaria exilis49.6452.0492.65204forward

Expression of CNT30385796

Peptides detected in this lncRNA

>peptide 1 (83 aa)
GDAGGAVDEGEDHAAEGPGLELAGLEQRRRRGLLVVLVLGPLRRRADGLPLRVLVRPEPHVLLLALHRCCPRRKVVAARLSWN*

>peptide 2 (49 aa)
MGGFCELVVRAALGVKSLIGPTGGSGRTTGDEDGGWWPGVTARRSGLACC

>peptide 3 (33 aa)
MGCRSEYLFAPSRTSSSLPSIAAALAGRWSLLA*

Sequence

>CNT30385796
CCGGAGATGCCGGCGGTGCAGTAGACGAGGGCGAAGATCATGCCGCCGAAGGACCAGGACTTGAGCTCGCCGGGCTCGAACAGCGGCGCCGGCGGGGGCT
CCTTGTAGTCCTTGTCCTCGGACCCCTGCGCCGCCGTGCCGATGGGCTGCCGCTCCGAGTACTTGTTCGCCCCGAGCCGCACGTCCTCCTCCTTGCCCTC
CATCGCTGCTGCCCTCGCCGGAAGGTGGTCGCTGCTCGCCTGAGCTGGAACTGAGCAAGATGGGCGGCTTCTGTGAGCTTGTGGTGAGGGCCGCACTGGG
AGTGAAGAGTCTTATAGGGCCAACCGGCGGTTCTGGAAGGACGACGGGTGACGAGGACGGCGGGTGGTGGCCCGGCGTGACAGCGAGGAGGAGCGGGCTG
GCTTGCTGTTT