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Detailed information on CNT30261241


BLAST search results

BLAST vs Swiss-Prot:
sp|Q06611|PIP12_ARATH, E-value = 3e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548370Brassica rapaIpomoea triloba21.1533.0588.3177forward
CNT30517286Brassica rapaJuglans regia24.4516.5185.3989forward
CNT30375144Brassica rapaArabidopsis thaliana72.2564.9487.45263forward
CNT30728378Brassica rapaCorchorus capsularis23.086.6889.2984forward
CNT30404919Brassica rapaBeta vulgaris22.2512.9485.1981forward
CNT30525480Brassica rapaPhaseolus vulgaris21.153.684.4277forward
CNT30631135Brassica rapaVigna unguiculata23.637.3384.8886forward
CNT30502187Brassica rapaNicotiana attenuata24.452.4585.3989forward
CNT30711465Brassica rapaGlycine max23.6318.4287.2186forward
CNT30163276Brassica rapaPistacia vera22.826.9585.5483forward
CNT3095762Brassica rapaSolanum tuberosum25.555.1684.9593forward
CNT30297784Brassica rapaTriticum aestivum25.8210.7384.0494forward
CNT30224613Brassica rapaHordeum vulgare25.8234.6985.1194forward
CNT30542732Brassica rapaBrassica napus73.0839.5895.49266forward
CNT30435838Brassica rapaAegilops tauschii14.5621.2988.6853forward
CNT3061285Brassica rapaArabidopsis lyrata72.2536.1889.35263forward
CNT30613102Brassica rapaArabis alpina23.6333.0887.2186forward
CNT30227805Brassica rapaAnanas comosus22.817.4486.7583forward
CNT30680173Brassica rapaTriticum urartu14.5621.8188.6853forward
CNT30477407Brassica rapaArabidopsis halleri43.4124.7691.14158forward
CNT30704968Brassica rapaPrunus avium21.158.5484.4277forward
CNT30644102Brassica rapaCannabis sativa25.5521.3887.193forward
CNT30118191Brassica rapaCitrus clementina24.458.5789.8989forward
CNT3035626Brassica rapaCucumis melo23.915.5483.9187forward
CNT3065055Brassica rapaSelaginella moellendorffii20.3320.0586.4974forward

Expression of CNT30261241

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MRVTSVSLGVSGGKDGVNKDKGSNNLSSKTTSFGVTGATVLAPPPRAWYCLGWNPLTTPAPQIAPRHCITM*

>peptide 2 (35 aa)
MMAAPRLLAGLIPVPVMGMVAKWTKNTANPIGRGT*

Sequence

>CNT30261241
ATGATGGCAGCTCCAAGACTCCTTGCTGGGTTGATTCCAGTTCCAGTAATGGGGATGGTTGCTAAGTGGACCAAGAACACAGCGAATCCGATAGGTAGAG
GAACATGAGAGTCACGAGCGTTTCTCTTGGCGTCAGTGGCGGAAAAGACGGTGTAAACAAGGACAAAGGTTCCAATAATCTAAGCTCCAAGACCACTTCC
TTTGGTGTAACAGGAGCTACAGTGTTGGCTCCACCTCCTAGAGCTTGGTATTGCTTAGGTTGGAACCCCTTGACCACACCAGCTCCACAGATAGCTCCTA
GGCACTGCATCACTATGTAGTACACAGCTCGTGTAAGCGAAAGCTTCCTGGCCAAAAACAGACC