Detailed information on CNT30340874


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Eragrostis tefOryza sativa22.227.9188.3360reverse complement
CNT30671344Eragrostis tefSetaria viridis23.3310.790.4863reverse complement
CNT30523825Eragrostis tefSetaria italica23.3319.9492.0663reverse complement
CNT30297784Eragrostis tefTriticum aestivum22.226.859060reverse complement
CNT30385796Eragrostis tefTriticum turgidum23.3315.3392.0663reverse complement
CNT30437220Eragrostis tefAegilops tauschii23.3311.0190.4863reverse complement
CNT30658043Eragrostis tefTriticum dicoccoides23.3322.9992.0663reverse complement
CNT30461535Eragrostis tefSaccharum spontaneum23.712.7592.1964reverse complement
CNT30131630Eragrostis tefLolium perenne23.723.8890.6264reverse complement
CNT30227805Eragrostis tefAnanas comosus22.9613.0388.7162reverse complement
CNT30712987Eragrostis tefMalus domestica golden24.0718.2186.1565reverse complement
CNT30680472Eragrostis tefTriticum urartu23.339.0492.0663reverse complement
CNT30366304Eragrostis tefSorghum bicolor23.3312.792.0663reverse complement
CNT30116072Eragrostis tefOryza nivara24.448.0487.8866reverse complement

Expression of CNT30340874

Peptides detected in this lncRNA

>peptide 1 (34 aa)
PSSSKKKEREKKLHLPQSSLTLLTRCPAPALLPL*

>peptide 2 (36 aa)
FFLKKEREGKKIASSSVLTHTPHSLSCSCSLAFIIP*

>peptide 3 (62 aa)
LLPQKRKRGKKNCIFLSPHSHSSLAVLLLLSCLYNPLTSDHHLHHHLHKPQLQETPRVQARK*

Sequence

>CNT30340874
CCTTCTTCCTCAAAAAAGAAAGAGAGGGAAAAAAAATTGCATCTTCCTCAGTCCTCACTCACACTCCTCACTCGCTGTCCTGCTCCTGCTCTCTTGCCTT
TATAATCCCCTGACCAGTGACCACCACCTCCACCACCACCTTCACAAACCGCAGCTTCAAGAAACACCGCGAGTCCAAGCGCGTAAGTAAAGAGAGGGGC
GAGAATGGAGGGCAAGGAGGAGGATGTGCGCCTGGGCGCGAACAAGTACGCGGAGCGGCAGCCCATCTGC