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Detailed information on CNT30316259

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT001875, E-value = 4e-49

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30670956	Corylus avellana	Setaria viridis	39.5	11.3	82.54	126	forward
CNT30523825	Corylus avellana	Setaria italica	32.92	33.23	82.86	105	forward
CNT30640424	Corylus avellana	Nymphaea colorata	39.5	15.16	82.54	126	forward
CNT30549105	Corylus avellana	Ipomoea triloba	91.22	51.14	86.6	291	forward
CNT30515171	Corylus avellana	Juglans regia	43.26	14.62	84.78	138	forward
CNT30375144	Corylus avellana	Arabidopsis thaliana	32.29	25.43	85.44	103	forward
CNT3020673	Corylus avellana	Citrullus lanatus	43.26	12.98	84.06	138	forward
CNT30728342	Corylus avellana	Corchorus capsularis	70.85	34.24	88.94	226	forward
CNT30631130	Corylus avellana	Vigna unguiculata	39.5	10.06	81.75	126	forward
CNT30502187	Corylus avellana	Nicotiana attenuata	89.66	7.87	80.42	286	forward
CNT30709876	Corylus avellana	Glycine max	31.97	28.57	82.35	102	forward
CNT3095762	Corylus avellana	Solanum tuberosum	67.08	11.88	82.71	214	forward
CNT30560771	Corylus avellana	Actinidia chinensis	92.16	38.63	86.73	294	forward
CNT30590202	Corylus avellana	Musa acuminata	45.14	15.93	86.81	144	forward
CNT30541063	Corylus avellana	Brassica napus	93.73	37.66	80.6	299	forward
CNT30234760	Corylus avellana	Brassica oleracea	66.46	69.51	81.13	212	forward
CNT30437220	Corylus avellana	Aegilops tauschii	43.89	24.48	80	140	forward
CNT30463151	Corylus avellana	Saccharum spontaneum	39.5	25.05	80.95	126	forward
CNT30133582	Corylus avellana	Lolium perenne	22.26	35.5	84.51	71	forward
CNT30609232	Corylus avellana	Gossypium raimondii	26.33	15.82	84.52	84	forward
CNT30227805	Corylus avellana	Ananas comosus	31.03	20.8	87.88	99	forward
CNT30646773	Corylus avellana	Rosa chinensis	66.46	57.45	84.43	212	forward
CNT30211930	Corylus avellana	Helianthus annuus	61.76	59.52	83.25	197	forward
CNT30622764	Corylus avellana	Daucus carota	20.69	15.07	87.88	66	forward
CNT30680472	Corylus avellana	Triticum urartu	43.89	20.09	80.71	140	forward
CNT30364641	Corylus avellana	Sorghum bicolor	39.5	16.28	82.54	126	forward
CNT30595794	Corylus avellana	Oryza meridionalis	29.15	42.47	83.87	93	forward
CNT30573330	Corylus avellana	Vitis vinifera	28.53	29.84	82.42	91	forward
CNT30706529	Corylus avellana	Prunus avium	43.26	8.97	82.61	138	forward
CNT3024898	Corylus avellana	Populus trichocarpa	43.89	27.03	85	140	forward
CNT30325169	Corylus avellana	Asparagus officinalis	44.83	53.96	83.22	143	forward
CNT30118191	Corylus avellana	Citrus clementina	39.5	12.13	88.1	126	forward
CNT3038888	Corylus avellana	Cucumis melo	43.89	13.53	82.86	140	forward
CNT30116072	Corylus avellana	Oryza nivara	39.5	15.35	84.13	126	forward
CNT30603734	Corylus avellana	Oryza punctata	26.96	6.55	83.72	86	forward
CNT30334008	Corylus avellana	Cynara cardunculus	18.5	26.22	88.14	59	reverse complement
CNT3050369	Corylus avellana	Cucumis sativus	69.59	49.22	82.43	222	forward

Expression of CNT30316259

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSRAPLAQTEELEVAPCSPCLSELLCPRVASLSTCLLQA*

>peptide 2 (56 aa)
VDKNKDHTTKSPSNSLDTHRSTHVGRALHTHHSQDGDVKEQEGGHKLCNPSPVEGP*

>peptide 3 (35 aa)
RQEQRSYHQKPKQFLGYPQKHTCWESASHPSQSRW*

Sequence

>CNT30316259
GTAGACAAGAACAAAGATCATACCACCAAAAGCCCAAGCAATTCCTTGGATACCCACAGAAGCACACATGTTGGGAGAGCGCTTCACACCCATCACAGTC
AAGATGGTGATGTAAAGGAACAAGAAGGTGGCCACAAACTCTGCAATCCCAGCCCTGTAGAAGGACCATGAGCAGAGCTCCCCTGGCTCAAACAGAGGAG
CTGGAGGTGGCTCCTTGTAGTCCTTGTCTGTCTGAGCTGCTGTGCCCAAGGGTTGCCTCTCTGAGTACTTGTTTGCTCCAAGCTTAACATCCTCTTCCTT
GCCCTCCATTGTTTTACTG