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Detailed information on CNT30116468


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 3e-67

BLAST vs NONCODE:
NONATHT002568, E-value = 2e-09

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640424Oryza nivaraNymphaea colorata32.3927.6886.96230forward
CNT30549105Oryza nivaraIpomoea triloba17.3221.6282.93123forward
CNT30515171Oryza nivaraJuglans regia25.9219.4980.43184forward
CNT3020673Oryza nivaraCitrullus lanatus32.9622.0184.19234forward
CNT30631130Oryza nivaraVigna unguiculata32.3918.3680230forward
CNT30297784Oryza nivaraTriticum aestivum41.8333.986.2297forward
CNT30221132Oryza nivaraHordeum vulgare20.4262.7793.1145forward
CNT30394052Oryza nivaraTriticum turgidum41.8320.7586.2297forward
CNT30564991Oryza nivaraActinidia chinensis39.4469.3183.93280forward
CNT30590285Oryza nivaraMusa acuminata46.230.7782.62328forward
CNT3085716Oryza nivaraVigna radiata18.8743.5182.09134forward
CNT30542732Oryza nivaraBrassica napus19.8620.9880.85141forward
CNT30234760Oryza nivaraBrassica oleracea16.4838.3682.91117forward
CNT30553574Oryza nivaraOryza glaberrima33.66100.4299.58239forward
CNT30437220Oryza nivaraAegilops tauschii32.2540.0390.39229forward
CNT30658043Oryza nivaraTriticum dicoccoides22.1157.390.45157forward
CNT30465879Oryza nivaraSaccharum spontaneum34.3725.5590.98244forward
CNT30131632Oryza nivaraLolium perenne21.9771.2393.59156forward
CNT30227805Oryza nivaraAnanas comosus27.4640.9785.13195forward
CNT30680472Oryza nivaraTriticum urartu32.1132.7191.23228forward
CNT30706529Oryza nivaraPrunus avium3013.8584.51213forward
CNT3038976Oryza nivaraCucumis melo30.2831.4881.4215forward
CNT30495761Oryza nivaraDigitaria exilis22.2540.3194.3158forward

Expression of CNT30116468

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MAARAAPMKGALVRDSFLARKRPKDQAMPWMPTVAHLEVELLTPMTVRTVM*

Sequence

>CNT30116468
AACCGAACTCCAATAGGAGGAGGATAGCTTAATTTGCACATAGTAAAAGAGGGATACACAACTGAGTACTGAAATTACAAGTCTGTGTTCAGATAAAAAC
AGTAGTACAACAAACTTGAAGAGGAACGTCGACTCCACAATAATTTACTAACAAAGCAGGCAGCGGGAAACAGCCGCGCCCATCAGAAACAGCTTGCTCT
GGATTGGCATCTTGACAGTGATAATAGCTGATGCAGGTTACGACCTGCTCTTGAATGGAATTGCCCTGATGACCACCTGGTGGTAGATGGCAGCAAGGGC
AGCGCCAATGAAGGGGGCCCTGGTGAGGGACAGCTTCCTGGCGAGGAAGAGGCCGAAGGACCAGGCGATGCCCTGGATGCCGACGGTGGCGCACTTGGAG
GTGGAGTTGTTGACCCCCATGACGGTGAGGACGGTGATGTAGAGGAAGAGGAAGGTGGCCATGAACTCGGCGATCCCTGCGCGGTAGAAGGACCACGACT
TGAGCTCCCCTGGCTCGAACAGCGGCGCCGGCGGCGGCTCCTTGTAGTCCTTGTCGTCGGAGCCCTGCGCCGCCGTGCCGATCGGCTGCCTCTCCGAGAA
CTTGTTGGCTCCCAGCCGGACATCCTCCTCCTTCCCCTCCATCTCTCTACTTTCTCTCTACTGCTTCTGCTGCTGGCTTCGCTCGCTCGAGCTGGCTGGG
TGAGGGTTGC