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Detailed information on CNT30364641


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EU94|PIP11_ORYSJ, E-value = 2e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316259Sorghum bicolorCorylus avellana16.2839.582.54126forward
CNT30549105Sorghum bicolorIpomoea triloba16.2822.1482.54126forward
CNT30515171Sorghum bicolorJuglans regia27.7822.7879.07215forward
CNT3020673Sorghum bicolorCitrullus lanatus29.7221.6482.17230forward
CNT30728342Sorghum bicolorCorchorus capsularis18.0921.2180.71140forward
CNT30590722Sorghum bicolorMusa acuminata20.2835.6885.99157forward
CNT30227805Sorghum bicolorAnanas comosus25.4541.3981.73197forward
CNT30653715Sorghum bicolorRosa chinensis17.5723.3380.88136forward
CNT3038712Sorghum bicolorCucumis melo14.3437.8882.88111forward
CNT30495989Sorghum bicolorDigitaria exilis29.0754.2289.78225forward
CNT30112244Sorghum bicolorFicus carica23.928.0380.54185forward

Expression of CNT30364641

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEEKHTQLSSVQEYTKSWVQITEQCSSEQS*

>peptide 2 (33 aa)
MAARAPSWVDASASNGDGGKLDLETPMTVRMVM*

>peptide 3 (45 aa)
MGCRSENLLAPRRTSSSFPSISAPLSPALRAWELGGFLKQRAVCVC

Sequence

>CNT30364641
TCGATGCAAATTTCACTAGACAGATAGATTCACATTTTCACATGACATGTGCCCTTTCTTGCCAAGATCCCAACGCATAAAAGGAGACGGGAACCCTTGC
AACAAACGGTAATAACTTAAATTCTCCACGATGGAAGAAAAACATACACAGCTGAGCTCGGTACAGGAATACACAAAGTCCTGGGTTCAGATTACAGAAC
AGTGCAGCAGTGAGCAATCTTGAAGAGAGACGAGGAATCGACTTTGGACCTAGGCGTGGGCAGGGCAGACAAAGACATCACAGGAAGACGCTCGTTCTTC
GGACTGGCATGTCTCGGCACGGCCGCGGCAGCTTAAGACCAGCTTAAGACCTGCTCTTGAACGGGATGGCCCTGATGATCACCTGGTGGTAGATGGCAGC
CAGGGCTCCTAGCTGGGTTGATGCCAGTGCCAGTAATGGGGATGGTGGCAAGTTGGACTTGGAGACGCCCATGACGGTGAGGATGGTGATGTAGAGGAAG
AGGAAGGTGGCGACGAACTCGGCGATGCCCGCGCGGTAGAAGGACCAGGACTTGAGCTCCCCGGGCTCGAACAGCGGCGCCGGCGGGGGCTCCTTGTAGT
CCTTGTCGTCCCCGGCGCCCTGCGCCGCCGTCCCGATGGGCTGCCGCTCCGAGAACTTGTTGGCGCCCAGGCGCACGTCCTCCTCTTTCCCCTCCATTTC
CGCTCCTCTCTCTCCTGCCTTGCGCGCTTGGGAGCTCGGTGGTTTCTTGAAGCAGCGAGCGGTGTGTGTCTGTG