« Back to Setaria viridis search


Detailed information on CNT30670956


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691396Setaria viridisOryza sativa28.6142.9383.7319forward
CNT30519732Setaria viridisSetaria italica17.0466.299.47190forward
CNT30640424Setaria viridisNymphaea colorata34.0845.7382.89380forward
CNT30316259Setaria viridisCorylus avellana11.339.582.54126forward
CNT30549105Setaria viridisIpomoea triloba11.322.1482.54126forward
CNT3020673Setaria viridisCitrullus lanatus20.6321.6483.04230forward
CNT30728342Setaria viridisCorchorus capsularis12.5621.2180.71140forward
CNT30631130Setaria viridisVigna unguiculata20.9918.6879.49234forward
CNT30298239Setaria viridisTriticum aestivum34.4456.8984.11384forward
CNT30221132Setaria viridisHordeum vulgare13.6365.890.13152forward
CNT30393291Setaria viridisTriticum turgidum34.4428.6184.11384forward
CNT30564991Setaria viridisActinidia chinensis25.3870.0582.33283forward
CNT30590223Setaria viridisMusa acuminata20.453083.33228forward
CNT30437220Setaria viridisAegilops tauschii20.7240.3890.48231forward
CNT30465879Setaria viridisSaccharum spontaneum21.8825.5595.49244forward
CNT30227805Setaria viridisAnanas comosus17.7641.682.83198forward
CNT30680472Setaria viridisTriticum urartu20.8133.2991.38232forward
CNT30366377Setaria viridisSorghum bicolor3374.0494.29368forward
CNT30595794Setaria viridisOryza meridionalis16.9586.394.71189forward
CNT3038976Setaria viridisCucumis melo19.131.1979.81213forward
CNT30575194Setaria viridisOryza barthii10.6758.0589.92119forward
CNT30116072Setaria viridisOryza nivara27.3537.1594.1305forward
CNT30603734Setaria viridisOryza punctata23.4119.8884.67261forward
CNT30112244Setaria viridisFicus carica16.4127.7381.42183forward
CNT3050369Setaria viridisCucumis sativus21.9754.3280245forward

Expression of CNT30670956

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MPVPVMGMVARWTRNTANPIGSGARICFHQIRIHGKH*

>peptide 2 (31 aa)
MALMITWCWVDASASNGDGGKVDQEHREPNW*

>peptide 3 (66 aa)
HDRKANKSSVQKYTGSGFRLTEQRSSREERRRIDRDTRRGHTRHQRGRRSFFSSGWHVSACGAVAA*

Sequence

>CNT30670956
CCACGATAGAAAAGCAAACAAGAGCTCGGTACAGAAATACACAGGTTCTGGGTTCAGATTAACAGAACAGCGCAGCAGTCGTGAAGAGAGGCGACGAATC
GACAGAGATACTAGGCGTGGGCACACAAGACATCAGAGAGGAAGACGCTCGTTCTTTTCTTCGGGCTGGCATGTCTCGGCGTGCGGGGCCGTCGCAGCTT
AAGACCTGCTCTTGAACGGGATGGCCCTGATGATCACCTGGTGCTGGGTTGATGCCAGTGCCAGTAATGGGGATGGTGGCAAGGTGGACCAGGAACACCG
CGAACCCAATTGGTAGTGGGGCAAGGATCTGTTTTCACCAAATAAGGATTCATGGTAAGCATTAGCACAAACATGAAAATATGTAATGAAAAGAATGCAT
ATATTTTCAATTCATAGGACCTAGAGTGCATAAGTTCATTACATGCGGCTTCTTAATGTCAAAGACAATAAATAGTTACATGCATACTGTATGAGGTCTA
TTAATTAAGTTGAACATCAGAAATTCAGAACACAAATTACAACACTGTCATATAAGATTTTAGTTGCAAATGTCGACTAAATAACATATATGTGATAAGC
TAAATTAATTGATGAAGAACTCCAACAATTGAACAAACTAGGGAAATCAAGCAGCAGCAGTACTTACAGGAACATGGGAGTCCCTGGCGTTCCTCTTGGC
GTCAGTGGCTGAGAACACGGTGTAGACCAGGACGAAGATCATTCCTCCGAAGGACCAGGCGATGCCCTGGATGCCGACGGTGGCGCACTTGGAGTTGGAC
TTGGAGACGCCCATGACGGTGAGGATGGTGATGTAGAGGAAGAGGAAGGTGGCGACGAACTCGGCGATGCCCGCGCGGTAGAAGGACCAGGACTTGAGCT
CCCCGGGCTCGAACAGCGGCGCCGGCGGGGGCTCCTTGTAGTCCTTGTCGTCCCCGGCGCCCTGCGCCGCCGTCCCGATGGGCTGCCTCTCCGAGAACTT
GTTGGCGCCCAGGCGCACGTCCTCCTCCTTCCCCTCCATCTGATCTCTCTCCTCTCTCTCTCTTCCCTTGCGCGTTTGGCCTCGTTGGTTTCTTGAAGCA
GCGGTGTGTGTCTGT