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Detailed information on CNT30658043


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Triticum dicoccoidesOryza sativa47.081786.82129forward
CNT30671344Triticum dicoccoidesSetaria viridis58.3927.1690160forward
CNT30523825Triticum dicoccoidesSetaria italica56.9349.3791.67156forward
CNT30640394Triticum dicoccoidesNymphaea colorata47.0825.886.82129forward
CNT30221132Triticum dicoccoidesHordeum vulgare36.543.2998100forward
CNT30385796Triticum dicoccoidesTriticum turgidum98.9165.9499.63271forward
CNT30437220Triticum dicoccoidesAegilops tauschii81.3938.9995.07223forward
CNT30461535Triticum dicoccoidesSaccharum spontaneum74.0940.4491.13203forward
CNT30131630Triticum dicoccoidesLolium perenne70.872.3994.33194forward
CNT30227805Triticum dicoccoidesAnanas comosus57.332.9882.17157forward
CNT30646773Triticum dicoccoidesRosa chinensis23.7217.6286.1565forward
CNT30712987Triticum dicoccoidesMalus domestica golden27.0120.7385.1474forward
CNT30680472Triticum dicoccoidesTriticum urartu82.4832.4299.56226forward
CNT30340874Triticum dicoccoidesEragrostis tef22.9923.3392.0663reverse complement
CNT30366304Triticum dicoccoidesSorghum bicolor56.9331.4591.67156forward
CNT30595794Triticum dicoccoidesOryza meridionalis20.0725.1196.3655forward
CNT3038712Triticum dicoccoidesCucumis melo24.0922.5386.3666forward
CNT30495761Triticum dicoccoidesDigitaria exilis73.3651.2892.04201forward
CNT30116468Triticum dicoccoidesOryza nivara57.322.1190.45157forward
CNT3050369Triticum dicoccoidesCucumis sativus24.0914.6390.9166forward

Expression of CNT30658043

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGCRSEYLFAPSRTSSSLPSIAAALAGRWSLLA*

>peptide 2 (83 aa)
RDAGGAVDEGEDHAAEGPGLELAGLEQRRRRWLLVVLVLGPLRRRADGLPLRVLVRPEPHVLLLALHRCCPRRKVVAARLSWN*

Sequence

>CNT30658043
CCAGAGATGCCGGCGGTGCAGTAGACGAGGGCGAAGATCATGCCGCCGAAGGACCAGGACTTGAGCTCGCCGGGCTCGAACAGCGGCGCCGGCGGTGGCT
CCTTGTAGTCCTTGTCCTCGGACCCCTGCGCCGCCGTGCCGATGGGCTGCCGCTCCGAGTACTTGTTCGCCCCGAGCCGCACGTCCTCCTCCTTGCCCTC
CATCGCTGCTGCCCTCGCCGGAAGGTGGTCGCTGCTCGCCTGAGCTGGAACTGAGCAAGATGGGCGGCTTCTGT