« Back to Cucumis sativus search


Detailed information on CNT3050609


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DO53|PIP12_MUSAC, E-value = 2e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631135Cucumis sativusVigna unguiculata21.9318.481.94216forward
CNT30224613Cucumis sativusHordeum vulgare6.2922.8890.3262forward
CNT3085716Cucumis sativusVigna radiata21.7369.4879.91214forward
CNT30542732Cucumis sativusBrassica napus14.0120.5482.61138forward
CNT30227805Cucumis sativusAnanas comosus18.4838.2482.42182forward
CNT30706529Cucumis sativusPrunus avium23.8615.2882.55235forward
CNT30112244Cucumis sativusFicus carica18.4827.5882.42182forward

Expression of CNT3050609

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MALITTWWYRAARAAPMKVPTISAPRPSPLV*

Sequence

>CNT3050609
AAGCATCATGGATTTAGATAAGATTTTCACTTGGACTTGAAAGGGATGGCTCTGATTACAACTTGGTGGTACAGAGCTGCAAGAGCAGCGCCGATGAAAG
TACCCACGATCTCAGCGCCAAGGCCATCCCCTTTGGTGTAACCGTCGCTCACAACGTTAGCTCCACCCCCGAGCCTTTCATAGGGCTTGGGTTGGAACCC
CTTCACCACTCCCGCGCCGCAGATGGCACCAAGGCATTGCATCACAATGTAGAAAATCGCCCTAGTCAACGACAATTTCCTCGCTAGAAACAACCCAAAA
GTGACCGCCGGGAAGAGAAAAGTAGCGAAAAACTCGGCGATTCCAGCTCTGTAAAAAGACCATGAAGTGAGCTCCTCTGGCTCAAAGAGAGGAGCCGGTG
GTGGCTCCTTGTAGTCCTTGGCATCGTCTTGGCTCTGCGCTGCCGTCCCAATGGGCTGCCTCTCGGTGAACCTATGGCACCAAGGCATTGCATCACAATG
TAGAAAATCGCCCTAGTCAACGACAATTTCCTCGCTAGAAACAACCCAAAAGTGACCGCCGGGTTAATGTGGCCACCAGAGATTCCAGCAGTACAGTAAA
CGAGAGCAAAAATCATACCACCGAAAGCCCAAGCAATGCCCTGAATCCCGACGGTGTTACAGGTATTACCATCCGCTTCCTTGGACCGGGTGACACCCAT
GACGGTCAAAACGGTGATGTAAAGGAAGAGAAAAGTAGCGAAAAACTCGGCGATTCCAGCTCTGTAAAAAGACCATGAAGTGAGCTCCTCCGGCTCGAAG
AGAGGAGCCGGTGGTGGCTCCTTGTAGTCCTTGGCATCGTCTTGGCTCTGCGCTGCCGTCCCAATGGGCTGCCTCTCGTTAAACTTATTGGCTCCCAATC
GAACATCCTCCTCCTTTCCCTCCATGATTTCTTCTTCCTTTTAGAGCTCTGTTTTTGTGTAGGTGAATACAATGGTGGAGAACGG