Detailed information on CNT30590202


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DO53|PIP12_MUSAC, E-value = 3e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676186Musa acuminataSetaria viridis25.5551.2284.42231forward
CNT30519732Musa acuminataSetaria italica20.1363.4184.07182forward
CNT30316259Musa acuminataCorylus avellana15.9345.1486.81144forward
CNT30549116Musa acuminataIpomoea triloba12.8340.8588.79116forward
CNT30375144Musa acuminataArabidopsis thaliana13.2729.6381.67120forward
CNT3019525Musa acuminataCitrullus lanatus9.7340.1884.0988forward
CNT30560771Musa acuminataActinidia chinensis31.0836.9380.43281forward
CNT3085716Musa acuminataVigna radiata9.2927.2783.3384forward
CNT30541063Musa acuminataBrassica napus20.823.6880.85188forward
CNT30234760Musa acuminataBrassica oleracea12.8338.0381.03116forward
CNT30131632Musa acuminataLolium perenne22.5793.1584.8204forward
CNT30227805Musa acuminataAnanas comosus21.5740.9784.62195forward
CNT30646773Musa acuminataRosa chinensis22.6855.5681.95205forward
CNT30681640Musa acuminataTriticum urartu25.1119.3582.38227forward
CNT30365858Musa acuminataSorghum bicolor17.1542.8285.16155forward
CNT30595794Musa acuminataOryza meridionalis20.1383.1184.07182forward
CNT3024497Musa acuminataPopulus trichocarpa9.1829.5489.1683forward
CNT3065055Musa acuminataSelaginella moellendorffii9.1822.4986.7583forward

Expression of CNT30590202

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPPKAQAIPWMPTVEHLVLDLTTPMTVRMLM*

>peptide 2 (65 aa)
MRVPSTPLGISGREDCVNQDEGANNLSTQATTLGVTRGHNIRSTSIVLIEPLLKPFHHARTAYGT*

Sequence

>CNT30590202
TAGAAAATAAACTTCAAACACAGGTAGCAACATAGCATTATTAAATATACATATTAGGCAACAATTTTGCTGCAATACAGAGAACCACCATATAGCAACA
TAGCGACATTAAATATACACACTAGGCAACAATTGTGGTGCAATACAGAGAAGCATAACGGAGGAAAGCCACAGACAAGATAGATAAAGGAGACACGACA
GAGACCAAGAAATTTTAAGAAAGCTCATGGCCTGCTCTTGAATGGGATTGCCCTGATAACTATCTGTTGGCACATGAGAGTCCCTAGCACTCCTCTTGGC
ATCAGTGGCAGAGAAGACTGTGTAAACCAGGATGAAGGTGCCAACAATCTCAGCACCCAAGCCACCACCCTTGGTGTAACCAGGGGCCACAACATTCGCT
CCACCTCCATTGTTCTCATAGAGCCCCTTCTTAAACCCTTTCACCACGCCCGCACCGCATATGGCACCTAGACACTGCATCACCATGTAGAACAGAGCCC
TGGTCAGGGACAGCTTCCTGGCCAGGAGCAGCCCAAAGATCATGCCACCAAAGGCCCAGGCAATCCCCTGGATGCCCACGGTGGAGCACTTGGTGTTGGA
CTTGACCACACCCATGACGGTGAGGATGCTGATGTAGAGGAAGAGGAAGGTGGCCATGAATTCTGCTATGCCAGCCCTGTAGAAGGACCATGAGCTGAGC
TCCGCTGGCTCAAACAGTGGAGCTGGTGGTGGCTCCTGGTAGTCCCTGTCCTGACTCTGGGCAGCTGTCCCTATTGCCTGCCTCTCCGAGAACTTGTTTG
CTCCCACCCTCACATCCTCCTCTCTCCCCTCCATCTTACCCCGAGGACACTCTTCTCCGGACTCTAGAACTATATGATGAGCACAGGAAAGAAACGTTGT
GTGG