« Back to Saccharum spontaneum search


Detailed information on CNT30465879


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670956Saccharum spontaneumSetaria viridis25.5521.8895.49244forward
CNT30297784Saccharum spontaneumTriticum aestivum21.6823.6388.41207forward
CNT30394052Saccharum spontaneumTriticum turgidum21.6814.4788.41207forward
CNT30227805Saccharum spontaneumAnanas comosus20.3140.7681.44194forward
CNT30680472Saccharum spontaneumTriticum urartu32.8845.0589.49314forward
CNT30366081Saccharum spontaneumSorghum bicolor51.3168.1590.82490forward
CNT30116468Saccharum spontaneumOryza nivara25.5534.3790.98244forward

Expression of CNT30465879

Peptides detected in this lncRNA

>peptide 1 (36 aa)
GQHARVHMHDALMQVVVQEGSGWLNGCYIKAASPFG*

>peptide 2 (65 aa)
MELLVTAKQHEMEKSVVFTHVIRPGMVLVVNDGGAKAPRRVDAGAGDGDGGQVDLETPMTVRMEM*

>peptide 3 (35 aa)
MGWRSENLLAPRRTSSSFPSMSPAISSLLAAAEPG*

Sequence

>CNT30465879
GGTCAGCATGCGAGGGTGCATATGCATGATGCGTTAATGCAGGTCGTTGTCCAAGAAGGTAGTGGTTGGCTGAATGGCTGCTACATTAAAGCAGCATCAC
CCTTCGGATAAGGGCAGGATTCCATAATCTAATCAAATTATTAAATTAACCAACAAATGCTTATGAGATTATATATCCTAGCATATCATGGCTTCGACCT
TCAGAAATTATGCTACTGATCAAAAGCAGTTCTGCAGTTGAATGCTGTAGACATATTTTTACTTCGTAGTTACTCCCCAATTTTACATCAGCTATTCAGA
CTCCAACTCACTATTTAATTTCAGATGATTCCATTTGATCAGACTAGACTCTTCATGTTACTTCTCGCAGTAAGCTAAACAGTTTTTGCTAAGGCAATGG
AACTACTTGTAACAGCTAAACAGCATGAAATGGAGAAGAGCGTTGTTTTCACTCACGTGATCAGACCAGGCATGGTGCTGGTTGTAAATGACGGCGGCGC
CAAGGCTCCGCGCCGGGTTGATGCCGGTGCCGGTGATGGGGATGGTGGCCAGGTGGACTTGGAGACGCCCATGACGGTGAGGATGGAGATGTAGAGGAAG
AGGAAGGTGGCGACGAACTCGGCGATGCCCGCGCGGTAGAAGGACCACGACTTGAGCTCCCCGGGCTCGAAGAGCGGCGCCGGCGGGGGCTCCTTGTAGT
CCTTGTCGTCGGTGCCCTGCGCCGCCGTGCCGATGGGCTGGCGCTCCGAGAACTTGTTGGCGCCCAGGCGCACGTCCTCCTCCTTCCCTTCCATGTCGCC
GGCTATTAGCTCGCTCCTTGCAGCAGCCGAGCCTGGCTAGCTAGAGCTAGAAGAAGAAGCTAGTTGCTGAGCTGAGCTGAGGTGGTGTGGTGCTTGTGTC
GCAGCGGGGAGTGAAGAGTCTTATAGTGAGCAGCAGCATCAATGGTGGCGAGGAG