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Detailed information on CNT30680472


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Triticum urartuOryza sativa32.5729.9182.82227forward
CNT30670956Triticum urartuSetaria viridis33.2920.8191.38232forward
CNT30523825Triticum urartuSetaria italica27.5560.7692.71192forward
CNT30640424Triticum urartuNymphaea colorata28.6924.0786.5200forward
CNT30316259Triticum urartuCorylus avellana20.0943.8980.71140forward
CNT30549105Triticum urartuIpomoea triloba18.0822.1481.75126forward
CNT30221132Triticum urartuHordeum vulgare19.5158.8799.26136forward
CNT30385796Triticum urartuTriticum turgidum32.4254.99100226forward
CNT30564991Triticum urartuActinidia chinensis27.9848.2787.18195forward
CNT30590722Triticum urartuMusa acuminata20.2332.0585.82141forward
CNT30437220Triticum urartuAegilops tauschii44.0553.6796.42307forward
CNT30658043Triticum urartuTriticum dicoccoides32.4282.4899.56226forward
CNT30465879Triticum urartuSaccharum spontaneum45.0532.8889.49314forward
CNT30131630Triticum urartuLolium perenne22.3858.2194.23156forward
CNT30227805Triticum urartuAnanas comosus27.9840.9782.05195forward
CNT30712987Triticum urartuMalus domestica golden10.6220.7385.1474forward
CNT30340874Triticum urartuEragrostis tef9.0423.3392.0663reverse complement
CNT30366081Triticum urartuSorghum bicolor37.4536.391.19261forward
CNT30325169Triticum urartuAsparagus officinalis20.2353.2185.11141forward
CNT3038712Triticum urartuCucumis melo15.9337.8881.98111forward
CNT30151223Triticum urartuBrachypodium distachyon12.221.9684.7185forward
CNT30495761Triticum urartuDigitaria exilis22.5340.0592.36157forward
CNT30116468Triticum urartuOryza nivara32.7132.1191.23228forward
CNT30603734Triticum urartuOryza punctata28.4115.0884.34198forward
CNT3050369Triticum urartuCucumis sativus20.2331.2685.11141forward

Expression of CNT30680472

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGCRSEYLFAPSRTSSSLPSIAAALAGRWSLLA*

>peptide 2 (31 aa)
HVNNLARFDNNGQHTQLSTDEITYKSWSRFR*

>peptide 3 (36 aa)
MRLHTSLGPGSGEYRVHQTWKTNWNSTVTRMTGRDI*

>peptide 4 (30 aa)
MMAAPRLLAGLMPVPVMGMVARWRRCSPSR*

Sequence

>CNT30680472
CACGTAAACAACTTGGCTCGATTTGACAATAACGGGCAGCACACACAACTGAGTACTGATGAGATTACATACAAGTCTTGGTCCAGGTTCAGGTGAATAC
AGAGTACATCAAACTTGGAAGACAAATTGGAATTCCACAGTAACACGGATGACGGGAAGAGATATATAGCCGCCTCATCAGAAATTCAGAACACGCAGCT
TGCTCTTCGGGTTGGGTTGGCATCTTCTTTGTAGCAGGAAGAACAGCTGCTTAGGACTTGGTCTTGAACGGGATCGCTCTGATGACCACCTGGTGGTAGA
CGGCGTGCTCCCTGTTGTAGATGATGGCCGCGCCGAGGCTCCTCGCCGGGTTGATGCCGGTGCCGGTGATGGGGATGGTGGCCAGGTGGCGCCGCTGTAG
CCCATCACGGTGAGGATGGTGACGTAGAGGAAGAGGAAGGTGGCCATGAACTCGGCGATGCCGGCGCGGTAGAAGGACCAGGACTTGAGCTCGCCGGGCT
CGAACAGCGGCGCCGGCGGGGGCTCCTTGTAGTCCTTGTCCTCGGACCCCTGCGCCGCCGTGCCGATGGGCTGCCGCTCCGAGTACTTGTTCGCCCCGAG
CCGCACGTCCTCCTCCTTGCCCTCCATCGCTGCTGCCCTCGCCGGAAGGTGGTCGCTGCTCGCCTGAGCTGGAACTGAGCAAGATGGGCGGCTTCTG