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Detailed information on CNT30112244


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Ficus caricaOryza sativa26.3622.9282.76174forward
CNT30670956Ficus caricaSetaria viridis22.2713.1882.31147forward
CNT30640314Ficus caricaNymphaea colorata14.3928.1184.2195forward
CNT30515171Ficus caricaJuglans regia27.2719.0782.78180forward
CNT3020673Ficus caricaCitrullus lanatus22.1213.7383.56146forward
CNT30728378Ficus caricaCorchorus capsularis24.712.9780.98163forward
CNT30631135Ficus caricaVigna unguiculata26.2114.7483.24173forward
CNT30224613Ficus caricaHordeum vulgare14.5535.4287.596forward
CNT30564991Ficus caricaActinidia chinensis26.9744.0683.71178forward
CNT3085716Ficus caricaVigna radiata26.2156.1783.82173forward
CNT30234760Ficus caricaBrassica oleracea14.0930.4986.0293forward
CNT30461535Ficus caricaSaccharum spontaneum16.2121.3183.18107forward
CNT30131630Ficus caricaLolium perenne17.4242.9182.61115forward
CNT30227805Ficus caricaAnanas comosus23.9433.1982.28158forward
CNT30712987Ficus caricaMalus domestica golden13.4824.9386.5289forward
CNT30364641Ficus caricaSorghum bicolor22.2718.9981.63147forward
CNT30706529Ficus caricaPrunus avium23.9410.2787.34158forward
CNT3038976Ficus caricaCucumis melo23.7922.9982.17157forward
CNT30495761Ficus caricaDigitaria exilis16.2127.383.18107forward
CNT30116072Ficus caricaOryza nivara23.4818.8885.16155forward
CNT30603734Ficus caricaOryza punctata26.0613.181.98172forward
CNT3050609Ficus caricaCucumis sativus20.313.682.84134forward

Expression of CNT30112244

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRINGGDHYFDLKGMALITTWNRNVAMNSAIPAL*

Sequence

>CNT30112244
CCACAATGAAAGACCATCTAACTGTTTATATGAAAGAGGTAGCGATTATTAACTATTAGATGGAGCCTATGAATAGTGACCTTTAAAAGGACTCTACCGT
AGACTAACCCAAAGTAAAAACCCTTGGATATAAAAGAAAGACACAAGCTTTGCTTATAACATTACAGAATATTCTTACATACACAAAATACAAATTACAC
ACTGCCAACAGCCAGTGAAGTTGAAAGCGGAACAAACTTGGCTTCTTTTTTGGGTTCTAAATTGGAATAATAATAGTAGCCAGAAAGGACAAACGTGTCA
TGTTGTTGTTGGACTTGGAGTGCTCCTGATGAGAATCAACGGTGGAGATCATTACTTTGATTTGAAGGGGATGGCCCTGATCACGACCTGGAACAGAAAC
GTCGCTATGAACTCGGCGATCCCCGCCCTGTAAAACGACCACGAGGTCAGCTCTCCCGGCTCGAACAGCGGCGCTGGCGGCGGCTCCTTATAGTCCTTCC
CGTCGTCTTGGCTTTGCGCCGCCGTCCCTATCGGCTGCCTCTCCGTGAACTTGTTCGCCCCCAATCTAACATCCTCTTCCTTCCCCTCCATTTTCTCTCT
CCTCTCACTTTCTCTCTCTAGTTTTTGATTTTTTGCTTCTATGATCTCTCTCCAGTTTCA