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Detailed information on CNT30234760


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640424Brassica oleraceaNymphaea colorata38.3614.0882.05117forward
CNT30316259Brassica oleraceaCorylus avellana69.5166.4681.13212forward
CNT30375144Brassica oleraceaArabidopsis thaliana42.9532.3585.5131forward
CNT3020673Brassica oleraceaCitrullus lanatus44.2612.782.96135forward
CNT30564991Brassica oleraceaActinidia chinensis38.3628.9684.62117forward
CNT30590202Brassica oleraceaMusa acuminata38.0312.8381.03116forward
CNT30541063Brassica oleraceaBrassica napus75.7429.0992.21231forward
CNT30613102Brassica oleraceaArabis alpina24.2628.4689.1974forward
CNT30133582Brassica oleraceaLolium perenne15.742489.5848forward
CNT30227805Brassica oleraceaAnanas comosus33.4421.4382.35102forward
CNT30646773Brassica oleraceaRosa chinensis38.3631.7181.2117forward
CNT30622764Brassica oleraceaDaucus carota25.2517.5884.4277forward
CNT30423559Brassica oleraceaPapaver somniferum21.3113.890.7765forward
CNT30706529Brassica oleraceaPrunus avium38.367.6183.76117forward
CNT3038888Brassica oleraceaCucumis melo44.2613.0482.22135forward
CNT30116468Brassica oleraceaOryza nivara38.3616.4882.91117forward
CNT30112244Brassica oleraceaFicus carica30.4914.0986.0293forward
CNT30334008Brassica oleraceaCynara cardunculus22.9531.1187.1470reverse complement
CNT3050369Brassica oleraceaCucumis sativus45.2530.683.33138forward
CNT3039904Brassica oleraceaMarchantia polymorpha21.313.8686.1565forward

Expression of CNT30234760

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPPKAQAMPWIPTEAHMFGALFTPITVNTVM*

>peptide 2 (63 aa)
LVVDNCGSKASSWVDSGPGYRNCRQQYSRRGQRSCHQKPKRCLGFQQRHTCLVLSSLPLLSTL*

Sequence

>CNT30234760
CTTGTTGTAGATAATTGCGGCTCCAAGGCTTCTAGCTGGGTTGATTCCGGTCCCGGTTATCGGAATTGTCGCCAGCAGTACAGTAGACGAGGGCAAAGAT
CATGCCACCAAAAGCCCAAGCGATGCCTTGGATTCCAACAGAGGCACACATGTTTGGTGCTCTCTTCACTCCCATTACTGTCAACACTGTGATGTAAAGG
AAGAGGAAAGTAGCTATGAACTCGGCGATTCCTGCTCTCCAGAACGACCATGAGCTCAGCTCTCCCGGCTCGAACAGTGGCGCAGGAGGTGGCTCCTTGT
AGTCC