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Detailed information on CNT30607989


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 2e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Gossypium raimondiiNymphaea colorata96.1388.6480.33671forward
CNT30376379Gossypium raimondiiArabidopsis thaliana75.570.8380.08527forward
CNT30500604Gossypium raimondiiCoffea canephora77.6588.1378.78542forward
CNT30269232Gossypium raimondiiChenopodium quinoa75.9383.3380530forward
CNT30524942Gossypium raimondiiPhaseolus vulgaris87.1190.6178.95608forward
CNT30628784Gossypium raimondiiVigna unguiculata96.9988.9680.21677forward
CNT30508904Gossypium raimondiiSolanum lycopersicum72.4981.8881.23506forward
CNT30145737Gossypium raimondiiMedicago truncatula58.7466.5680.24410forward
CNT30154791Gossypium raimondiiPrunus persica93.5584.0481.78653forward
CNT30149986Gossypium raimondiiBrachypodium distachyon40.2631.3382.92281forward
CNT30558075Gossypium raimondiiPanicum hallii39.8335.2383.81278forward
CNT30551544Gossypium raimondiiOryza brachyantha51.7251.9482.27361forward

Expression of CNT30607989

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MWDCNLVRLDCTQEKWGYKREMWGYRKEMWGCTKEMWGCMMEMWGCTMEKWGYMQEKWGYMQEKWGYIRVKWGCS*

>peptide 2 (34 aa)
MLDCKDWKETTLDYLVSMPETDCTWLTAGCNLER*

Sequence

>CNT30607989
CTGTAATTAGGTGATGTTGGACTGTAAGGACTGGAAGGAGACAACCTTGGACTACTTGGTGAGTATGCCAGAGACGGACTGTACTTGGCTGACTGCGGGT
TGTAACTTGGAGAGGTAGGGCTATAGCTTGGTGATGTGGGACTGTAACTTGGTGAGGTTGGACTGTACCCAGGAGAAGTGGGGCTATAAGCGGGAGATGT
GGGGCTATAGGAAGGAGATGTGGGGCTGTACGAAGGAGATGTGGGGCTGTATGATGGAGATGTGGGGCTGTACGATGGAGAAGTGGGGCTATATGCAGGA
GAAGTGGGGCTATATGCAGGAGAAGTGGGGCTATATACGGGTGAAGTGGGGCTGTAGCTAGGTGAAGTGGGACTGTAACTGGGGGATGTGGGACTGTAAC
TTGGAGATGTAGGGCTATAGCTTGGTGAGGTTGGAGAATATGAGGGGCTGGTAGGAGAGTAGGCTGGACTTGTCGGACTGTATCCTGGTGAGCTAGGACT
GTAAGTAGGTGATGTGGGGCTGTAACCAGGAGAGGTGGGACTGTACCCAGGAGATGTAGGACTGTAACCAGGAGAGGTAGGACTGTAACCAGGTGATGAC
GGACTGTATCCAGGAGATGATGGGCTGTAACCGGGGGATGACGTAGGAGAGAATGCCATTCCACCAACATAAGGCGAGAACTGTGCATCTGAAATGGG