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Detailed information on CNT30673492


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 4e-137

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521128Setaria viridisSetaria italica37.8950.4199.73369forward
CNT30374815Setaria viridisArabidopsis thaliana37.7889.179.35368forward
CNT30266655Setaria viridisChenopodium quinoa41.9936.3985.82409forward
CNT30495282Setaria viridisOlea europaea37.4720.7381.1365forward
CNT30712013Setaria viridisGlycine max38.483.6782.62374forward
CNT3047442Setaria viridisPrunus dulcis34.855.9484.07339forward
CNT30158121Setaria viridisPistacia vera42.0965.682.2410forward
CNT3086110Setaria viridisVigna radiata29.7725.9483.1290forward
CNT30508429Setaria viridisSolanum lycopersicum12.2248.1886.55119forward
CNT30174161Setaria viridisTrifolium pratense37.0645.7580.61361forward
CNT30144438Setaria viridisMedicago truncatula29.6759.180.28289forward
CNT30662024Setaria viridisTriticum dicoccoides34.766.5484.32338forward
CNT3082721Setaria viridisBrassica juncea18.7963.3284.7183forward
CNT30471855Setaria viridisSaccharum spontaneum46.248.9194.89450forward
CNT30650534Setaria viridisRosa chinensis60.3763.0983.84588forward
CNT30368076Setaria viridisSorghum bicolor44.9740.2295.43438forward
CNT30620812Setaria viridisCajanus cajan36.3428.580.79354forward
CNT30429132Setaria viridisPapaver somniferum59.4536.5179.79579forward
CNT30570674Setaria viridisVitis vinifera37.7838.9883.97368forward
CNT3035650Setaria viridisCucumis melo38.427.7486.9374forward
CNT30148817Setaria viridisBrachypodium distachyon45.1738.0686.14440forward
CNT30101810Setaria viridisOryza rufipogon44.9717.2892.01438forward
CNT30174554Setaria viridisVigna angularis60.1681.6281.74586forward
CNT30113343Setaria viridisFicus carica19.8254.5286.53193forward

Expression of CNT30673492

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MRTVWTRMGTIAPPSLRYSTVTWVFPSGLSQGQVPFLRTSVRRAPSLVARTWLRGISSGVSSVAYPNMCPWSPAPISSGRFVKWPCTP*

>peptide 2 (84 aa)
MHTLSNIRGLLLNVHEHLAVVSVKPDICRHETDVAASVPDNLLVVDVGLGGDLTKDHDHVSLGAGLASNLAVGVLSKASIKHSI*

>peptide 3 (47 aa)
MTMLVLVQVSQATLLSGSSARQASSTASETWSQSLSGCRLRPSFLICS

>peptide 4 (41 aa)
TIQMIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

>peptide 5 (31 aa)
MFTSTLQWSASSPTSADTKPMLRQVSLTIFS*

>peptide 6 (33 aa)
NTNDSKGQIKNHNTEATKHDKRSRPKASSQRAP*

Sequence

>CNT30673492
ACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCC
TTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGATC
TCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGACCTGGACGATGGCGCGGCGAG
CAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAGCGGCAATCTCATCGTTGGTGACTGTCTCGTCGTGCTG
GGTAGAGATGAGGACAGTGTGGACACGGATGGGGACCATCGCACCACCCTCATTGCGGTACTCGACAGTCACCTGGGTCTTCCCATCAGGCCTGAGCCAG
GGGCAGGTCCCATTCTTGCGCACCTCTGTGAGACGAGCACCAAGCTTGGTGGCAAGGACGTGGCTGAGGGGCATCAGCTCAGGGGTCTCATCAGTTGCAT
ACCCAAACATGTGTCCCTGGTCACCAGCTCCGATCTCCTCAGGGCGCTTTGTGAAGTGGCCATGCACACCCTGAGCAATATCAGGGGACTGCTGCTCAAT
GTTCACGAGCACCTTGCAGTGGTCAGCGTCAAGCCCGACATCTGCCGACACGAAACCGATGTTGCGGCAAGTGTCCCTGACAATCTTCTCGTAGTCGACG
TTGGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTAGTCTTGGTGCAGGTCTCGCAAGCAACCTTGCTGTCGGGGTCCTCAGCAAGGCAAGCAT
CAAGCACAGCATCTGAGACCTGGTCGCAGAGCTTGTCAGGGTGTCGACTGCGGCCATCTTTTCTGATCTGCAGC