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Detailed information on CNT30508429


BLAST search results

BLAST vs Swiss-Prot:
sp|P43280|METK1_SOLLC, E-value = 2e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Solanum lycopersicumSetaria viridis48.1812.2286.55119forward
CNT30521128Solanum lycopersicumSetaria italica48.1816.2686.55119forward
CNT30549907Solanum lycopersicumIpomoea triloba45.7521.0487.61113forward
CNT30515028Solanum lycopersicumJuglans regia52.2315.1985.27129forward
CNT30373104Solanum lycopersicumArabidopsis thaliana35.2210.3790.887forward
CNT30618114Solanum lycopersicumSesamum indicum47.3725.8884.62117forward
CNT30266655Solanum lycopersicumChenopodium quinoa41.39.0788.24102forward
CNT30381356Solanum lycopersicumManihot esculenta39.6833.6886.7398forward
CNT30495282Solanum lycopersicumOlea europaea23.083.2492.9857forward
CNT30712018Solanum lycopersicumGlycine max49.3922.9885.25122forward
CNT30158121Solanum lycopersicumPistacia vera38.4615.286.3295forward
CNT3090332Solanum lycopersicumSolanum tuberosum48.1818.3196.64119forward
CNT30294498Solanum lycopersicumTriticum aestivum51.8216.0285.94128forward
CNT30225303Solanum lycopersicumHordeum vulgare33.628.6285.5483forward
CNT30662024Solanum lycopersicumTriticum dicoccoides51.8225.285.94128forward
CNT3082721Solanum lycopersicumBrassica juncea33.628.7284.3483forward
CNT30471855Solanum lycopersicumSaccharum spontaneum51.0113.784.92126forward
CNT3013982Solanum lycopersicumZea mays33.628.6285.5483forward
CNT30218668Solanum lycopersicumKalanchoe fedtschenkoi27.9417.8386.9669forward
CNT3066706Solanum lycopersicumLeersia perrieri33.624.4185.5483forward
CNT30681758Solanum lycopersicumTriticum urartu51.8218.7785.94128forward
CNT30367875Solanum lycopersicumSorghum bicolor38.4611.4985.2695forward
CNT30355133Solanum lycopersicumLactuca sativa21.466.0688.6853forward
CNT3025933Solanum lycopersicumPopulus trichocarpa23.088.1792.9857forward
CNT3036529Solanum lycopersicumCucumis melo36.0320.7588.7689forward
CNT30101810Solanum lycopersicumOryza rufipogon51.014.9786.51126forward
CNT30174546Solanum lycopersicumVigna angularis25.18.187.162forward
CNT30113343Solanum lycopersicumFicus carica35.2224.5886.2187forward

Expression of CNT30508429

Peptides detected in this lncRNA

>peptide 1 (57 aa)
SGMTGLMTCSLRSRAISSLVTVSSCWVEIRTVCTLIGTMVPFLRTSVRRAPSLVAST*

>peptide 2 (62 aa)
LWDDWFDDMLLKVAGNLIIGNGLIVLGGDKNSVYPNWNHGAILADFCKTGTKFSCKHVTERH*

Sequence

>CNT30508429
CTCTGGGATGACTGGTTTGATGACATGCTCCTTAAGGTCGCGGGCAATCTCATCATTGGTAACGGTCTCATCGTGTTGGGTGGAGATAAGAACAGTGTGT
ACCCTAATTGGAACCATGGTGCCATTCTTGCGGACTTCTGTAAGACGGGCACCAAGTTTAGTTGCAAGCACGTGACTGAGAGGCATTAATTCAGGGGTCT
CATCTGTTGCATAGCCAAACATGTGGCCCTGGTCACCAGCACCAATC