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Detailed information on CNT30521128


BLAST search results

BLAST vs Swiss-Prot:
sp|Q944U4|METK_DENCR, E-value = 1e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Setaria italicaSetaria viridis50.4137.8999.73369forward
CNT30515028Setaria italicaJuglans regia37.9832.7483.09278forward
CNT30374815Setaria italicaArabidopsis thaliana49.0486.9279.67359forward
CNT30266655Setaria italicaChenopodium quinoa22.6814.7787.95166forward
CNT30712018Setaria italicaGlycine max44.8161.7782.62328forward
CNT3047442Setaria italicaPrunus dulcis47.2757.184.39346forward
CNT30225130Setaria italicaHordeum vulgare39.3468.2586.11288forward
CNT30508429Setaria italicaSolanum lycopersicum16.2648.1886.55119forward
CNT30144140Setaria italicaMedicago truncatula36.6171.8578.36268forward
CNT30662024Setaria italicaTriticum dicoccoides47.9569.0984.62351forward
CNT3082721Setaria italicaBrassica juncea2563.3284.7183forward
CNT30650534Setaria italicaRosa chinensis49.5938.9584.85363forward
CNT30626924Setaria italicaDaucus carota34.0219.7583.94249forward
CNT30686961Setaria italicaTriticum urartu49.5941.8785.12363forward
CNT30620812Setaria italicaCajanus cajan35.7921.182.06262forward
CNT30570674Setaria italicaVitis vinifera50.9639.5183.65373forward
CNT30174554Setaria italicaVigna angularis49.3250.2882.27361forward
CNT30113343Setaria italicaFicus carica26.3754.5286.53193forward

Expression of CNT30521128

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIARGRSRITTQKPQNMISAADQKLLLKGRLRQKASPT*

>peptide 2 (88 aa)
MRTVWTRMGTIAPPSLRYSTVTWVFPSGLSQGQVPFLRTSVRRAPSLVARTWLRGISSGVSSVAYPNMCPWSPAPISSGRFVKWPCTP*

Sequence

>CNT30521128
CAAGATAGAAAGCAGCAGGTCCCCTTCCTTCTCAAAGTAGCCTGCAGCTTCATTCTTTGGTTCACCATTACATAAACAGCAAAACCAGAAATAGCAGACA
ATAATTCCTCCTCTAGGTAAATAACCAGACACAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAG
AATCACAACACAGAAGCCACAAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCT
TCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTCAGCGGCAATCTCATCGTTGGTGACTGTCTCGTC
GTGCTGGGTAGAGATGAGGACAGTGTGGACACGGATGGGGACCATCGCACCACCCTCATTGCGGTACTCAACAGTCACCTGGGTCTTCCCATCAGGCCTG
AGCCAGGGGCAGGTCCCATTCTTGCGCACCTCTGTGAGACGAGCACCAAGCTTGGTGGCAAGGACGTGGCTGAGGGGCATCAGCTCAGGGGTCTCATCAG
TTGCATACCCAAACATGTGTCCCTGGTCACCAGCTCCGATCTCCTCAGGGCGCTTTGTGAAGTGGCCATGCACACCCTGAGCAATATCAGGGGACTGCTG
CTCAATGTTCACGAGCACCTTGCAGTGGTCAG