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Detailed information on CNT30606743


BLAST search results

BLAST vs Swiss-Prot:
sp|A7L2Z6|METK_GOSHI, E-value = 7e-88

BLAST vs NONCODE:
NONATHT001922, E-value = 3e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549537Gossypium raimondiiIpomoea triloba40.7365.3282.99435forward
CNT30372626Gossypium raimondiiArabidopsis thaliana40.3667.2480.74431forward
CNT30490001Gossypium raimondiiOlea europaea23.0349.684.96246forward
CNT3047443Gossypium raimondiiPrunus dulcis32.9629.5186.36352forward
CNT30638840Gossypium raimondiiCapsicum annuum29.6837.1281.7317forward
CNT3090332Gossypium raimondiiSolanum tuberosum16.6727.3884.27178forward
CNT30225701Gossypium raimondiiHordeum vulgare13.1127.583.57140forward
CNT3086464Gossypium raimondiiVigna radiata7.2138.1284.4277forward
CNT30508528Gossypium raimondiiSolanum lycopersicum23.6948.7583253forward
CNT30174161Gossypium raimondiiTrifolium pratense23.2231.4383.47248forward
CNT3082721Gossypium raimondiiBrassica juncea7.7728.7285.5483forward
CNT30212612Gossypium raimondiiHelianthus annuus14.2363.0783.55152forward
CNT30344080Gossypium raimondiiEragrostis tef7.9629.5184.7185reverse complement
CNT30477100Gossypium raimondiiArabidopsis halleri24.0665.0680.93257forward
CNT30620812Gossypium raimondiiCajanus cajan30.1525.9382.3322forward
CNT30355133Gossypium raimondiiLactuca sativa17.0420.883.52182forward
CNT30432398Gossypium raimondiiPapaver somniferum58.851.7381.69628forward
CNT30570674Gossypium raimondiiVitis vinifera33.6138.0384.4359forward
CNT3024331Gossypium raimondiiPopulus trichocarpa33.934.7184.81362forward
CNT3036529Gossypium raimondiiCucumis melo10.0224.9484.11107forward
CNT30174546Gossypium raimondiiVigna angularis16.3922.8882.29175forward
CNT30113343Gossypium raimondiiFicus carica9.9329.9484.91106forward

Expression of CNT30606743

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIILRPVRPASIQGFHLWRNQTYGPGHQHRFPRDAY*

>peptide 2 (46 aa)
MLTSTLQLSASRPTSSDVKPMPRQVSQATLLSGSCAKQASRTASEI*

>peptide 3 (92 aa)
MALVTSTDFLGTLTEMAMDTLGNIRALLLYVNQHFAVVGIQTHIVRCETDATAGLASHLALRILCQTGIEDCIRDLITQLVGMSLVHRLRGK*

>peptide 4 (94 aa)
MDLVPLQWLDNLPSEICVIPTKMTIRSSLQEPAIAPSLKIKIDGNHSWSEVKGLLHNLENFLVWDLSSTVSVHKYRQWLRYTNGVGDLHDAPPS*

>peptide 5 (46 aa)
WQYILSHCYFIHYLSYHMHMHIYKFNQISNPKKEIKGNCKKSRLIW*

>peptide 6 (52 aa)
GSTSFLIAISFITSHIICICIYINLIKFQTQKKKLKEIVRKADSYGSRQQIR*

Sequence

>CNT30606743
TGGCAGTACATCCTTTCTCATTGCTATTTCATTCATTACCTCTCATATCATATGCATATGCATATATATAAATTTAATCAAATTTCAAACCCAAAAAAAG
AAATTAAAGGAAATTGTAAGAAAAGCAGACTCATATGGTAGCAGACAGCAGATAAGATAAATCAGACATAGAATCAATGTGAAGAAGCTCCAATTAAGCA
TGGACCTTGTCCCACTTCAGTGGCTTGACAACCTCCCAAGTGAAATCTGTGTCATCCCGACCAAAATGACCATACGCAGCAGTCTTCAAGAACCTGCTAT
TGCCCCCTCTCTTAAGATCAAGATTGATGGCAATCATTCCTGGTCTGAAGTCAAAGGTCTCCTTCACAATCTTGAGAATTTCCTTGTCTGGGATCTTTCC
AGTACCGTAAGTGTCCACAAATACAGACAATGGCTCAGGTACACCAATGGCGTAGGAGACTTGCACGATGCACCTCCTAGCTAGTCCATTAGCAACAATG
CTCTTCGCAGCCTGCCTCACAATGTAAGCCCCGCTTCTATCCACCTTGGTAGGGTCTTTACCAGAGAAAGCCCCACCACCATGAGCACCCCATCCTCCAT
AAGTATCAATGATAATCTTGCGACCAGTGAGACCAGCATCAATTCAGGGGTTTCATCTGTGGCGTAACCAAACATATGGCCCTGGTCACCAGCACCGATT
TCCTCGGGACGCTTACTGAGATGGCCATGGACACCTTGGGCAATATCAGGGCTTTGTTGCTCTATGTTAACCAGCACTTTGCAGTTGTCGGCATCCAGAC
CCACATCGTCAGATGTGAAACCGATGCCACGGCAGGTCTCGCAAGCCACCTTGCTCTCAGGATCCTGTGCCAAACAGGCATCGAGGACTGCATCAGAGAT
CTGATCACACAGCTTGTCGGGATGTCCCTCGTTCACAGACTCCGAGGTAAATAGGAAGGTCTCCATTCCTTAATTTCTGCAAAACCCAATTCAATAAATC
CTTTATTCCACTAAAGAAACACGCTAAAAAGACAAGCAGATCTGCAACTCAAAAGCAGAAATAGCAAA