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Detailed information on CNT3025933


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30508429Populus trichocarpaSolanum lycopersicum8.1723.0892.9857forward
CNT30471855Populus trichocarpaSaccharum spontaneum52.8740.1182.66369forward
CNT30421092Populus trichocarpaPapaver somniferum35.3936.9881.78247forward
CNT30113343Populus trichocarpaFicus carica27.9455.0888.21195forward

Expression of CNT3025933

Peptides detected in this lncRNA

>peptide 1 (52 aa)
RTHYYIFAAALQLPRASLTGICYFHCRKFNQNYHTFSHHRHWGKKRRKKKPK*

>peptide 2 (60 aa)
MAQRHILRGLIGGITKHMALVTSTNLLWPLGKVTVDTLGNIRALLLNVNQDFALVSIKTNI

>peptide 3 (57 aa)
MSVCGCLQEPIATPLEIQVDGLSQGQVPFFLTSVRRAPSLVASTWLKGIYSGVSSVA*

Sequence

>CNT3025933
CAAGAACACATTACTACATTTTTGCTGCTGCTCTACAGCTACCTCGTGCAAGCTTAACAGGCATTTGTTACTTCCATTGCCGTAAATTCAACCAAAATTA
TCACACTTTTTCACACCACCGACACTGGGGAAAAAAAAGACGGAAAAAAAAACCCAAATAGTAAAAGAAAGGAAAATGAATAGGGAGGGTATCGTAGTGT
AGACCATGGCAGATTGCTATTGATTATAGACCAGCAGCAAGAAAACAAGTCAAATTATTCATCAAGGACCAATAAAACAGGCATCGAACTAAAGGGATAT
TATAAATCACTCAAGCTTGGGGCTTCTCCCATTTGAGGGGCTTGACAACCTCCCAGGTGAAGTCTGGGTCATCCCTTCCAAAATGTCCGTATGCGGCTGT
CTTCAAGAACCTATTGCCACCCCTCTTGAGATCCAGGTTGATGGTCTTAGCCAAGGGCAGGTGCCATTCTTCCTAACTTCAGTGAGGCGAGCCCCGAGCT
TGGTGGCAAGTACATGGCTCAAAGGCATATACTCAGGGGTCTCATCGGTGGCATAACCAAACATATGGCCCTGGTCACCAGCACCAATCTCCTCTGGCCG
CTTGGTAAAGTGACCGTGGACACCCTGGGCAATATCAGGGCTCTGCTGCTCAATGTTAACCAAGACTTTGCACTTGTCAGCATCAAGACCAACATCAT